Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq6015 753 0.0 >seq6015 Length=1491 Score = 753 bits (834), Expect = 0.0 Identities = 757/981 (77%), Gaps = 2/981 (0%) Strand=Plus/Minus Query 154976 AGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCC 155035 ||||| | ||||| |||| ||||| | || |||||||||||||||| | ||||||| Sbjct 1343 AGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATCC 1284 Query 155036 CTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAG 155095 |||| || || |||| | || ||||| |||| ||||| ||||| || || |||| Sbjct 1283 CTTGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAG 1224 Query 155096 ACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCT 155155 |||| |||||||| ||||| || || |||||||| | | || ||||||||||||||| Sbjct 1223 ACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACAACATCATCA 1164 Query 155156 CTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAG 155215 | |||||||| |||| | ||| ||||| |||||| | |||||||| || |||||||||| Sbjct 1163 CAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAATTTGGGAAG 1104 Query 155216 CAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACT 155275 | || |||||||| |||||||| ||||| |||||||||| |||||| | || | |||| Sbjct 1103 CTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCGTTTGTCACT 1044 Query 155276 TCCTTATCGGAATC-ACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGC 155334 ||||| | || | || || ||| |||||| |||||||| | |||| |||| | || Sbjct 1043 TCCTTTTAGGTGTATACTGC-TACATGGGTCGTGAGTGGGAATTATCTTTCCGTTTAGGT 985 Query 155335 ATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTC 155394 |||||||| |||||| |||||| ||||| || |||||| |||| || |||||||||| Sbjct 984 ATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGCGCTGTATTC 925 Query 155395 CTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGT 155454 | ||||| || | || |||||||| ||||| |||| |||||| | |||||| ||| Sbjct 924 TTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGTATCAGCGGT 865 Query 155455 ACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCAC 155514 ||||| |||| ||| |||| |||||||| || ||||| |||||||||||||| |||||| Sbjct 864 ACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTCCAC 805 Query 155515 ATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTG 155574 ||| | || || || ||||| || ||||| || | |||||||| |||||||||||||| Sbjct 804 ATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTA 745 Query 155575 GTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAG 155634 || || || || ||||||||||||| ||||| | || || ||| | |||||| Sbjct 744 GTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAGGTTACCGT 685 Query 155635 TTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTT 155694 || || |||||||||||||| || ||||| || || ||||| || |||||||||||| | Sbjct 684 TTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTCGGTCGTTTA 625 Query 155695 ATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGG 155754 |||||||| || || || ||||||||||| | | ||||||||||| ||||| ||| Sbjct 624 ATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTGCTTGG 565 Query 155755 CCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAAC 155814 || || || | || ||| || ||| | ||| | ||||| ||||| |||||||||||| Sbjct 564 CCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTCAACCTTAAC 505 Query 155815 GGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGTGGTAAAGTCATCCCTACATGGGCA 155874 ||||||||||||||||| || || |||||| | ||| || | || |||||| Sbjct 504 GGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCA 445 Query 155875 GACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAAC 155934 ||||| | ||||| ||| | |||||||||||||||||||||||||||||||||||| Sbjct 444 GACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAAC 385 Query 155935 TTCCCTCTTGACCTTGCTGCT 155955 |||||||| ||| | ||| || Sbjct 384 TTCCCTCTAGACTTAGCTTCT 364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584784831068400