Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq6015 634 2e-177 >seq6015 Length=1491 Score = 634 bits (702), Expect = 2e-177 Identities = 735/988 (74%), Gaps = 2/988 (0%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 364 AGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAA 423 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | ||| | | || |||||||| | || ||| | | |||||| || Sbjct 424 GTTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAATACACGACCTTGTGAGTCTACAAC 483 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGT 40708 ||| ||||| ||||| ||||| || ||||| ||||||||||| || | ||| | | || Sbjct 484 TGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGAAAGACCTAAAGCTGT 543 Query 40709 AAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTT 40768 | ||| || || ||||| || ||||| | || |||||||||| | ||| ||||| Sbjct 544 GAACCAAATACCGATAACTGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGAGAGTTGTT 603 Query 40769 GAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATA 40828 ||||||||| ||||| || |||| | ||| ||||||||||| || ||||||||||| || Sbjct 604 GAATGAAGCGTATTGGAAGATTAAACGACCGAAGTAACCGTGAGCTGCTACGATGTTGTA 663 Query 40829 AGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTC 40888 || || |||| |||||||| || || | ||| |||||| |||| || || || Sbjct 664 TGTTTCTTCTTCTTGACCAAAACGGTAACCTTCGTTAGCTGATTCGTTTTCAGTTGTTTC 723 Query 40889 CCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAA 40948 || || | || |||||||| | |||||||| |||| || || | ||||||||| Sbjct 724 ACGGATTAACGATGAAGTAACTAATGAACCGTGCATTGCAGAGAATAATGAACCACCAAA 783 Query 40949 GACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAA 41008 || || ||||| || | ||| |||||||||||||| || |||||||| || |||||||| Sbjct 784 TACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAA 843 Query 41009 GACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACC 41068 || | |||||||||||| || || ||||| ||||||||||||||||| ||||| ||||| Sbjct 844 TACGATCATGAAGTTGAAAGTACCGCTGATACCTAAAGGCATACCATCTGAGAATGAACC 903 Query 41069 CTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGC 41128 || || | ||| ||||||||||||||||| |||||| | | |||||||| ||| || Sbjct 904 TTGGCCAATTGGGTAAACTAAGAATACAGCGCTAGCTGCAGCTACTGGAGCTGAGTAAGC 963 Query 41129 CACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTA 41188 ||| |||||||| | |||||||| | | | || | |||||||| | ||| ||| Sbjct 964 AACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCACTCACGACCCATGTA 1023 Query 41189 TGCTG-CTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATA 41247 || | ||| |||| | |||||| | || || ||||| || || || |||||||||| Sbjct 1024 -GCAGTATACACCTAAAAGGAAGTGACAAACGATTAGTTGGTAAGGACCACCGTTGTATA 1082 Query 41248 GCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAG 41307 ||||||||| || || | |||||||| ||||||||||| |||| || || ||||||| Sbjct 1083 ACCACTCGTCAAGAGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAAACCAATAGCGTTAG 1142 Query 41308 AGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGG 41367 | | || | ||||| || | || || ||||| ||||| | | || || || || | Sbjct 1143 AAGTTGGGATTACAGCACCTGTGATGATGTTGTTACCGTAAAGAAGAGAACCAGATACTG 1202 Query 41368 GCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAAACATG 41427 ||||||| || ||||| || ||||| ||||| || ||||| || ||||| ||||| || Sbjct 1203 GCTCACGGATACCATCGATGTCTACTGGCGGAGCAGCGATGAAAGCGATGATGAATACTG 1262 Query 41428 TGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGT 41487 || ||||| || | || ||||| | ||||| |||||||| | ||||| |||| Sbjct 1263 ATGTTGCAGTAAGAAGACAAGGGATCATGATTACACCGAACCAACCGATGTATAAACGGT 1322 Query 41488 TGTCGGTGCTAGTGACCCAGTTACAAAA 41515 | || || ||||| ||| | |||||| Sbjct 1323 TTTCAGTTGAAGTGATCCACTCACAAAA 1350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143690642449260