Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq6015 691 0.0 >seq6015 Length=1491 Score = 691 bits (766), Expect = 0.0 Identities = 748/986 (76%), Gaps = 4/986 (0%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCC-AA 67416 || ||| | ||| |||||||||||||||||||||||||||||||| |||||||| || || Sbjct 364 AGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAA 423 Query 67417 GTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGTCAACGA 67476 || || | ||| | ||||||||||||||| | || ||| || ||| || | Sbjct 424 GTTA-GCACGGTTGATGATGTCTGCCCAAGTGTTTAATACACGACCTTGTGAGTCTACAA 482 Query 67477 CGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAG 67536 | ||||||||||||||||||||||| |||||||| ||||||||||| | ||| | || | Sbjct 483 CTGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGAAAGACCTAAAGCTG 542 Query 67537 TGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGT 67596 ||||||| || | || || || | ||||| ||||||||||| | | ||||||| Sbjct 543 TGAACCAAATACCGATAACTGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGAGAGTTGT 602 Query 67597 TGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGT 67656 |||| || || || |||||||| || ||||||||||| || ||||| || || ||||||| Sbjct 603 TGAATGAAGCGTATTGGAAGATTAAACGACCGAAGTAACCGTGAGCTGCTACGATGTTGT 662 Query 67657 AAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTT 67716 | || ||||||||||| || || |||||| | ||| ||| || | ||||| |||| Sbjct 663 ATGTTTCTTCTTCTTGACCAAAACGGTAACCTTCGTTAGCTGATTCGTTTTCAGTTGTTT 722 Query 67717 CTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGA 67776 | | ||| | || |||||||| | ||||||||||| ||| || | ||||||||| | Sbjct 723 CACGGATTAACGATGAAGTAACTAATGAACCGTGCATTGCAGAGAATAATGAACCACCAA 782 Query 67777 ATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGA 67836 ||||||| || || || | ||| ||||||||||||||||||||||||||||| ||||||| Sbjct 783 ATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGA 842 Query 67837 ACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAAC 67896 | |||| |||| |||| |||||||| ||||| | |||||| | || ||||| |||| Sbjct 843 ATACGATCATGAAGTTGAAAGTACCGCTGATACCTAAAGGCATACCATCTGAGAATGAAC 902 Query 67897 CTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATG 67956 |||| || | || || || ||||| |||||| ||||||| |||||||| ||||| | Sbjct 903 CTTGGCCAATTGGGTAAACTAAGAATACAGCGCTAGCTGCAGCTACTGGAGCTGAGTAAG 962 Query 67957 CTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGT 68016 | ||| |||||| ||||||||||| | |||| |||| | |||||||| |||||| || Sbjct 963 CAACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCACTCACGACCCATGT 1022 Query 68017 ATGCTGT-GATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATAC 68075 | || || | || | ||||||||| | || | |||||| |||| ||||| || || Sbjct 1023 A-GCAGTATACACCTAAAAGGAAGTGACAAACGATTAGTTGGTAAGGACCACCGTTGTAT 1081 Query 68076 AACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTT 68135 |||||||| || ||||| || |||||||| || || |||||||| | ||| || ||||| Sbjct 1082 AACCACTCGTCAAGAGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAAACCAATAGCGTTA 1141 Query 68136 GAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACA 68195 ||| | || | |||||||| | ||||||||||||||||| | || ||||| | || Sbjct 1142 GAAGTTGGGATTACAGCACCTGTGATGATGTTGTTACCGTAAAGAAGAGAACCAGATACT 1201 Query 68196 GGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAA 68255 || || | |||||||||||| || ||||| || || || ||||| || |||||||| Sbjct 1202 GGCTCACGGATACCATCGATGTCTACTGGCGGAGCAGCGATGAAAGCGATGATGAATACT 1261 Query 68256 GTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATAGATGCGA 68315 | || ||| | || | ||||| ||||| | |||||||||||||| | || | || Sbjct 1262 GATGTTGCAGTAAGAAGACAAGGGATCATGATTACACCGAACCAACCGATGTATAAACGG 1321 Query 68316 TTGTCAACTGAGGTGACCCAGTTACA 68341 || ||| ||| |||| ||| | ||| Sbjct 1322 TTTTCAGTTGAAGTGATCCACTCACA 1347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566898371672400