Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq6015 710 0.0 seq3788 352 3e-92 seq4831 104 3e-17 >seq6015 Length=1491 Score = 710 bits (786), Expect = 0.0 Identities = 758/994 (76%), Gaps = 14/994 (1%) Strand=Plus/Plus Query 67839 AGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAA 67898 || ||| | ||| |||||||||||||| ||||||||||| ||||| ||||||||||| || Sbjct 364 AGAAGCTAAGTCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAA 423 Query 67899 ACCAGCGCGGTTGAGAACGTCTGCCCAGGT-----AGGCAGAACCTTACCAGAACTATCA 67953 ||| ||||||| | ||||||||| || | || ||||| || ||| | Sbjct 424 GTTAGCACGGTTGATGATGTCTGCCCAAGTGTTTAATACACGACCTTGTGAGT-CTACAA 482 Query 67954 AGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGT 68013 ||| ||||||||||||||||| || |||||||| ||||| || || ||| | Sbjct 483 CTGAT----TGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGAAAGACCTAAA 538 Query 68014 GCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAG 68073 || |||||||| ||||| | || ||||| ||||| ||||||||||| | ||||| ||| Sbjct 539 GCTGTGAACCAAATACCGATAACTGGCCAAGCAGCTAGGAAGAAGTGTAATGAACGAGAG 598 Query 68074 TTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATG 68133 |||||||| || || || |||||||| | |||||||||||| || || || || || ||| Sbjct 599 TTGTTGAATGAAGCGTATTGGAAGATTAAACGACCGAAGTAACCGTGAGCTGCTACGATG 658 Query 68134 TTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTG 68193 ||||| || |||||||||||||| || |||||| | ||| || || ||||||| Sbjct 659 TTGTATGTTTCTTCTTCTTGACCAAAACGGTAACCTTCGTTAGCTGATTCGTTTTCAGTT 718 Query 68194 GTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCA 68253 |||||||| | | || |||||||| | ||||| ||||||||| ||| | || ||| Sbjct 719 GTTTCACGGATTAACGATGAAGTAACTAATGAACCGTGCATTGCAGAGAATAATGAACCA 778 Query 68254 CCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCT 68313 |||||||| |||||||| || | ||| ||||| |||||||| |||||||||||||| ||| Sbjct 779 CCAAATACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCT 838 Query 68314 TGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAAC 68373 ||||| || | |||| ||||||||||||| || || | |||||| | || ||||| Sbjct 839 TGGAATACGATCATGAAGTTGAAAGTACCGCTGATACCTAAAGGCATACCATCTGAGAAT 898 Query 68374 GAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAG 68433 |||||||| || | || || || | ||| || ||| ||||| || || || || ||| Sbjct 899 GAACCTTGGCCAATTGGGTAAACTAAGAATACAGCGCTAGCTGCAGCTACTGGAGCTGAG 958 Query 68434 TATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCC 68493 || |||||| |||||| ||||||||||| | ||| | || | |||||| ||||| ||| Sbjct 959 TAAGCAACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCACTCACGACCC 1018 Query 68494 ATGTATGCA-AAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATT 68552 ||||| ||| | | ||| | ||||||||| | | | |||||| |||||||||| || Sbjct 1019 ATGTA-GCAGTATACACCTAAAAGGAAGTGACAAACGATTAGTTGGTAAGGACCACCGTT 1077 Query 68553 GTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGC 68612 ||| |||||||| ||||| || || ||||||||||| || || ||||| | |||||| || Sbjct 1078 GTATAACCACTCGTCAAGAGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAAACCAATAGC 1137 Query 68613 ATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGC 68672 || ||| | || | |||||||| | |||||||||||||| || ||||| ||||||| Sbjct 1138 GTTAGAAGTTGGGATTACAGCACCTGTGATGATGTTGTTACCGTAAAGAAGAGAACCAGA 1197 Query 68673 AACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA 68732 || || ||||| |||||||||||||| || || |||||||||||||| |||| |||||| Sbjct 1198 TACTGGCTCACGGATACCATCGATGTCTACTGGCGGAGCAGCGATGAAAGCGATGATGAA 1257 Query 68733 -ACAGATGGTTGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAA 68791 || ||| ||||| | ||| || ||||||||| | || ||||||||||| | ||| | Sbjct 1258 TACTGAT-GTTGCAGTAAGAAGACAAGGGATCATGATTACACCGAACCAACCGATGTATA 1316 Query 68792 GGCGGTTCTCTGTGGAAGTCACCCATTCGCAGAA 68825 ||||| || || ||||| | ||| || || || Sbjct 1317 AACGGTTTTCAGTTGAAGTGATCCACTCACAAAA 1350 >seq3788 Length=5474 Score = 352 bits (390), Expect = 3e-92 Identities = 381/505 (75%), Gaps = 0/505 (0%) Strand=Plus/Plus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 |||| || || |||||||| || | |||||||| |||||||| | ||| || |||| Sbjct 2236 ATTATAGAGCGTTACCACGCGGTAATACTTCTTCAGGGAATACTAGACGTTCGTGAGGTT 2295 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 | || | |||| ||| ||||| | |||||| || | || ||||| || || |||| Sbjct 2296 GGTCTTGCGCAGCCATCCAAGCACGGATACCTTCGTTAAGAAGGATGTTTTTAGTATAGA 2355 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | || |||||||| |||||||| || || | ||| ||||| ||||| ||||||||||||| Sbjct 2356 AAGTTTCGAACTCAGGGTCTTCAGCAGCACGGATTTCTTGTGATACGAAGTCATAAGCAC 2415 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 ||||||| ||||| | ||||| || ||| | | ||| ||||||| ||| | || |||| Sbjct 2416 GAAGGTTAAGAGCTAAACCAACAACACCTAGAGCACTCATCCAAAGCCCCGTCACGGGAA 2475 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 | || | ||| ||||| || ||||| | ||| || || || | |||||| || || | Sbjct 2476 CTAAAAGCATGAAGAAGTGTAACCAACGCTTGTTAGAGAAAGCTACACCAAAAATTTGTG 2535 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 ||||||| |||||||| || |||||||||||||||||||| | || |||| || ||| | Sbjct 2536 ACCAGAAACGGTTTGCTGTTACCATTGAGTAAGTTTCTTCAGCCTGTGTAGGGTTGAAGG 2595 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | ||| ||||| || ||||||||||| | | || || ||||| ||| |||| | Sbjct 2596 CACGGAACGTGTTAGCACCGTCACCATCTTCGAATAATGTGTTTTCTACAGTAGCACCGT 2655 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| ||| | | || |||||||| | | ||| |||||||||||||| || || |||| Sbjct 2656 GAATAGCACATAATAAAGCACCACCTAAAACACCAGCTACACCCATCATGTGGAATGGGT 2715 Query 67066 TCAAGGTCCAGTTATGGAATCCTTG 67090 ||| |||||||||||||| ||||| Sbjct 2716 TCAGTGTCCAGTTATGGAAACCTTG 2740 Score = 208 bits (230), Expect = 9e-49 Identities = 356/513 (69%), Gaps = 10/513 (2%) Strand=Plus/Plus Query 67099 GAAGGAATCGAAAGATTGCTGAGACCCCGAAAGAT-GGAGCGAAAAACCAACTCGATTGA 67157 ||| ||| || |||||||| | || || |||| | ||||| || ||||||| |||||| Sbjct 3995 GAATGAAACGGAAGATTGCAGCTACACC-AAAGCTAGGAGCAAAGAACCAACCTGATTGA 4053 Query 67158 CCCAGAGGGTAGATGAGAAAGACACTAACAAAAACAGCGATAGGACCAGAGAACGCAATA 67217 || | ||||| || || || ||| |||||| |||| || || | ||||| |||||| Sbjct 4054 CCTAATGGGTAAATTAGGAAAACAGCAACAAATACAGAAATTGGCGCTGAGAAAGCAATA 4113 Query 67218 GCATTGTAGGGACGGA----TACCGATGAGACGTGCCAGTTCAAACTGGCGAAGCATGAA 67273 || || || ||||| | ||| || ||| || | ||||||||| | | ||| || Sbjct 4114 GCGTTATATGGACGTAAGTTTACTGA----ACGAGCAATTTCAAACTGTCTTAACATAAA 4169 Query 67274 ACCAATTAGAGCGAAAGCCCCGTGGAGCGCCACAAAATTCCAGAGTCCTCCAAGTTGGAT 67333 ||||||| | ||||| ||||| | || || || ||| | || |||||||| Sbjct 4170 GCCAATTAATGAAAAAGCACCGTGTAAAGCTACGAATGCCCATAAACCACCAAGTTGACA 4229 Query 67334 CCAGCGGACGAAATCCCCCTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCAT 67393 ||| || ||| || || |||| || |||||||||| | |||||||| || |||| Sbjct 4230 CCAACGTGTGAAGTCACCTTGAGCTTCTGGACCCCAAACAAATAGAAGAGAGTGTGCCAT 4289 Query 67394 AGCATCAGCAGGCGTTGACACAGCCGCTGTGAGAAAATTAGCACCCTCAAGATAACTAGA 67453 | | ||||| ||||| ||||| || || | || ||| ||| || | ||| || Sbjct 4290 ACTGTTTGCAGGTGTTGATACAGCTGCAGTTAAGAAGTTACAACCTTCTAAGTAAGAAGT 4349 Query 67454 CGCGAGTCCGTGAGTGTACCAGCTTGTGACAAACGTAGTACCAGTAAGCCAGCCACCAAT 67513 || | || || || ||||| ||| || || || |||||||| | ||| ||||| | Sbjct 4350 AGCTAAACCATGTGTATACCATGATGTTACGAAAGTTGTACCAGTTAACCAACCACCTAG 4409 Query 67514 TGCCATATAAGCAGTGGGAAAAAGAAGTAGTCCAGACCAACCCACAAAGACAAAGCGATC 67573 ||| | |||||| || ||||| | || || |||||||| ||||| || || || || Sbjct 4410 TGCAAAGTAAGCACAAGGGAAAAGTAATAAACCTGACCAACCTACAAATACGAAACGGTC 4469 Query 67574 TCGTTTAAGCCAGTCATCAAGGACATCGAACCA 67606 | | |||||||||||| | |||| ||||| Sbjct 4470 TTGACGTAGCCAGTCATCAGCGTCATCAAACCA 4502 >seq4831 Length=2924 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 35510 ACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCT 35569 ||||||||||||||| ||||||||||||||||||| ||||||| |||| ||||| || || Sbjct 1713 ACTCCCCAGGTAGGACTTGAACCTACGACCAATCGGTTAACAGCCGATCGCTCTACCACT 1654 Query 35570 GAGCTACTGAGGATT 35584 |||||||||| |||| Sbjct 1653 GAGCTACTGAAGATT 1639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572005131814800