Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq222 210 6e-49 seq31 91.5 4e-13 seq34 86.0 2e-11 >seq222 Length=84561 Score = 210 bits (232), Expect = 6e-49 Identities = 618/949 (65%), Gaps = 80/949 (8%) Strand=Plus/Plus Query 181810 ACATTGGCGTCGGGCTGGACAACCCAAACCAGCTCCTTGCAGGGGTGATTTAAGTTGAGC 181869 || ||| ||| |||||| || ||||| || ||||||||| |||||| || ||||| | | Sbjct 62606 ACGTTGTCGTTGGGCTGCACGACCCAGACGAGCTCCTTGGTGGGGTGGTTGAAGTTCATC 62665 Query 181870 TTGATCTTGTTGGAAGACGAACCAACCGACTCATCACCAGTGAACTGAAGCTGCTCAATC 181929 |||||||||||| | | ||||||||| |||||||| |||||||| || Sbjct 62666 TTGATCTTGTTGTTGGTGTTGCTGGTGCTCTCATCACCGGTGAACTGCAGCTGCTCGATG 62725 Query 181930 AGGTACTCGTGGGGGTTCTGCGCCATGCGGCGACGCTCATCGGTGTCAAGGAAAATGTAG 181989 ||||||||||||| | ||| || | |||||| ||||| |||||||| ||| | |||||| Sbjct 62726 AGGTACTCGTGGGAGACCTGGGCGAAGCGGCGGCGCTCGTCGGTGTCGAGGTAGATGTAG 62785 Query 181990 TCAACGAACAGCGAGGCGGCGGCCAG-----CGAC--TGCTTGTAGGCA--TCGGTAATC 182040 || || || ||||| ||||| |||| | || || | | || | ||| || Sbjct 62786 TCGACAAAGAGCGACGCGGCCACCAGGCTGCCCACGCTGACGGCGGACAGGTTGGTGGTC 62845 Query 182041 TTGGTGCCGGTGCCGTCAATCGCGCTGACAGCCCA---CAGGCACTCCTCAATATTGCGG 182097 | ||||| || |||| || || | ||||| ||||| | | || | | | Sbjct 62846 CAGTTGCCGCTGGCGTCGGGGCCGGTGCCGGCCCAGTACAGGC--TGCGCACG-TCGTTG 62902 Query 182098 ATGTCAAGGTTAATCTTGACCTCGTGGTACTGAAGGGCGATGAGGGGGAGGGCAAGGCCG 182157 | || | ||| ||||| |||||||||||||| |||||||||||||| || || |||||| Sbjct 62903 AACTCGATGTTGATCTTCACCTCGTGGTACTGGAGGGCGATGAGGGGCAGCGCCAGGCCG 62962 Query 182158 GGATTGCGGCAATACCAGAACTGCAGGGGAACATACAGAGTGGTCTCGGGTAGGGCATTG 182217 || |||||||| | |||||| |||||| | |||| || | | | Sbjct 62963 GGGTTGCGGCAGAAGAAGAACTCCAGGGGGATGTACA---------------GGACCTCG 63007 Query 182218 CGTGGGGCGCATACCTGACGGACACCGTTGGCCGAGCAGGGACCATCAACGGCGGCGAAG 182277 | | |||||| || ||| || || || | || || | Sbjct 63008 CC-----------CTTGACGGTCA----TGGACGCGCCGGA---------GTCGTTGAGG 63043 Query 182278 GTGGGGTCGCATACGTATGTAAGCTGGGTGGTGTTACCAACCATCTTGTAGTAGCCACGC 182337 |||||| | || || || | ||| ||| ||| ||| |||||| || Sbjct 63044 GTGGGGACC---ACC------AGAGAGGGGATGTGGCCACACATGTTGGCGTAGCCCAGC 63094 Query 182338 TCCTGCTCCTTGGAGAGGGTCAGCTGATTCCAGATGTGCATCCAGTCACCGTACTGACGG 182397 | || | || |||| |||| ||||||||| |||||||||||||| || | Sbjct 63095 TGGTGGCCGGCGGTCTGGGTGAGCTCGGACCAGATGTGGATCCAGTCACCGTAGTGCTTG 63154 Query 182398 TCAATGCGCTGACCACCAATCTCAACCTCAACCTGCGAGATGAGCT----GCTCACCTGG 182453 || |||||||| ||||| ||||||| ||| || | |||||| || |||| Sbjct 63155 TCGATGCGCTGGCCACCGATCTCAAGCTCGACGGACTTGATGAGGGCGTGGCCCACCC-- 63212 Query 182454 GAAGTCTAACCAGCGAGCGTAGACATCGCCCGAGCTGAGCGACTGACCAATCTCTGGGAG 182513 ||| | |||||| | || | |||| | | || || | | ||| || || Sbjct 63213 --AGTTGACCCAGCG---GAAGCCGGCGCC---GTCGGGC-ACGGTCACATCG--GGCAG 63261 Query 182514 AGTGATCTGTAGGTATGTGCGGTAGGCAAGGTCACCATTGCGCGAGATAGTGCAGGTTAC 182573 | | ||||| ||||||| ||||| || ||||| ||| |||||||| || Sbjct 63262 CTGCACGCGCAGGTAGGTGCGGTGAATGAGGTCGCCGTTGCGACTGATCGTGCAGGTCAC 63321 Query 182574 ACGACGACCGAAATCAGCCTGACCGTTGAAAGTCTGCTCAATAGACTCCATCGCGAAGTG 182633 ||| ||| || |||||||| |||||| || |||||||| || |||| Sbjct 63322 CTTCTTGTTGAAGTCACCCGAGCCGTTGAACACCTGCTCGATGGACTCCATGGCAAAGTT 63381 Query 182634 GGTGTGGCGACGGTAAGTCACTTTCCAGAATGTAATCTGGGGATTACCAGTCAGGTAAAC 182693 |||||| || || || || || | || || |||||||| || ||||||||||| | Sbjct 63382 GGTGTGACGGCGATACACGACCTTGAAAAACGTGATCTGGGGGTTGCCAGTCAGGTAGAT 63441 Query 182694 ATCTTGGGCCCCGTAGGCAACTAATTGCATAAGTCCTCCAGCCATTTTT 182742 || || || ||||| || || | |||||| || || ||| |||||||| Sbjct 63442 GTCCTGAGCACCGTAAGCGACGAGTTGCATTAGACCGCCACCCATTTTT 63490 Score = 167 bits (184), Expect = 7e-36 Identities = 230/320 (72%), Gaps = 25/320 (8%) Strand=Plus/Plus Query 181188 GTAAGCTAACCCACCCATACCCGACATAATACGCAGAACGTTGTAATTGACAGCATAGAC 181247 ||| ||||| |||||||| || |||||| ||||| |||||||| |||| || |||| Sbjct 62089 GTAGGCTAAGCCACCCATGCCGCTCATAATCCGCAGGACGTTGTAGTTGATGGCGTAGAT 62148 Query 181248 ACGGACCTTGGCAGTAT---------TTACGCCCTGGACGGTCG------CGTTAGATAG 181292 ||||||||||| || | |||| | ||||||| || | || | Sbjct 62149 GCGGACCTTGGCGGTGCGGGGGGTCGTCGCGCCGTTGACGGTCTTCTGGACGGTTGAGGG 62208 Query 181293 -GACAAG-----CTGCAGAGTAGCATTGTCAATACGCGAGAAATTGCAGGAACCCGATGG 181346 | || | |||||| |||||||||||||| |||||||| ||||||| ||||| || Sbjct 62209 CGTCAGGGTCATCTGCAGGGTAGCATTGTCAATGCGCGAGAAGTTGCAGGTGCCCGACGG 62268 Query 181347 CTGGTGCTCCTCTGGGCGTAGCGCAAAAGAGTAGACGTTAATGCCCGAATCGGGGGCACG 181406 |||||||||||| ||||| || | || ||||| ||||| |||||| | | |||||| Sbjct 62269 CTGGTGCTCCTCGGGGCGCAGGCCGAAGGAGTAAACGTTGATGCCC--TTGGACGGCACG 62326 Query 181407 --GGTGTGGTGCTGGAAGGGCTGGACCAGGTCGAAGTAGGTGCCCTCACGCTCCGAGAAG 181464 |||||||||| ||||||| || |||| | ||||| ||| || || || | | | Sbjct 62327 TTCTCGTGGTGCTGGTAGGGCTGCACGAGGTTGTAGTAGCGGCCGTCGCGGTCGGCGGTG 62386 Query 181465 CGGTCCTGGCCATTGAGCTG 181484 ||||| ||||| |||||||| Sbjct 62387 CGGTCGTGGCCGTTGAGCTG 62406 Score = 136 bits (150), Expect = 1e-26 Identities = 592/931 (64%), Gaps = 18/931 (2%) Strand=Plus/Plus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCAC 155646 |||| |||||||| || || ||||| ||||| | | | | |||| || | ||||| Sbjct 74382 CAATGGACGCCAGGTTGCAGACCGCCGTCTCGTCGGGGCTGGTGTACTCGAGGATCTCCG 74441 Query 155647 AGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAG 155706 ||| ||||| | |||||||||||| | || | |||||| || | ||| || | Sbjct 74442 TGCAGAGGTTGCTGCACTTGATGGTGCCCAGATGTTGCTGGTTGCTCTTGCGGTTGCAGG 74501 Query 155707 CATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCC 155766 |||||||||||| ||||| ||||| || ||||| ||||| || ||||| || | || Sbjct 74502 AATCCTTGTATAGCATGTACGGGGTACCCGTCTCGATCTGCGCATCCAGGATGGCAAACC 74561 Query 155767 AGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACA 155826 | || | |||| || |||| | || || ||| || | | || | Sbjct 74562 ACAGCTGCTGGGCGCGGATCGTCTTGCGCGCACGCCCCTCGCGCTCGTAGCGCGTGTAGA 74621 Query 155827 G-CGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAAC 155885 | || || | || || || | || || |||||||| || | ||||||||| Sbjct 74622 GCCGCTC-AAACTCGTCGCCCCAGCAGTCCGCTAGTCCAGGCGCCTCGTTGGGGCAAAAG 74680 Query 155886 AGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATACATCACTCGCCCAAATAG 155943 |||||||| || ||| | || |||| ||| || | || | |||| || | Sbjct 74681 AGCGACCACTCCGCAT--CCGCCTCGACCCGCTGCATGAAGAGGTCGTTGACCCACATGG 74738 Query 155944 CATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGA 156003 || ||| | ||||| || |||||||| | ||||| ||||| || ||||| | || Sbjct 74739 CAAGGAACAAGTCCCGCGCGCGCGACTCCTCTTTCCCGTGGTTCTTGCGCAGCTCGATGA 74798 Query 156004 ATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTT-- 156061 | || ||| |||| || |||||||| || || ||||| || || | ||| Sbjct 74799 AGTCAAAAATGTCAGCGTGCCAGGGCTCCAGGTAAATGGCAAACGCCCCCTTGCGCTTTC 74858 Query 156062 -GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATAC 156120 ||| ||||| || || || || || || | || ||||| | ||||| || | || | Sbjct 74859 CGCCCCCCTGGTCCACGTAACGCGCCGTGTCGTTAAAGACGCGCAGCATGGGTACGATGC 74918 Query 156121 CATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATAT 156180 | ||||| ||||| ||||| ||||| |||| || || | | || | | ||||| Sbjct 74919 CGTTGGACGTGCCGTTGGTGCCGCGGATATAGGAGCCGGTGGCACGGATGTCGTGAATGG 74978 Query 156181 GTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAA 156240 || || || ||||| | || ||||| ||||| || || | || | ||| Sbjct 74979 ACAGGCCGATGCCACCCGCGTTCTTGGAAATGACCGCGCACTCTTTGAGCGTGTCATAAA 75038 Query 156241 TACCTTCAAT--------AG-AATCATCTTCCATTGATAGTAGATAGCACGAACTTAATT 156291 | || || || || ||| | | ||| | || ||||||| || | | Sbjct 75039 TGCCCTCGATGCTGTCGCAGCCATCGCCCTTCATGTGCACCAGGAAGCACGAGCTCATCT 75098 Query 156292 GAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAG 156351 |||| || || || |||| |||||| || || || | || || | ||| | | Sbjct 75099 GAGGGCGCGGCGTGCCAGAGTTGAAGAGCGTGGGCGACGCGTGCGTGAAACGGCGCTCCG 75158 Query 156352 ACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGA 156411 |||| | || ||||| | |||| || | | |||| || | | | || Sbjct 75159 ACATCAGGTGATACGTCTCGATGGCGCTCTCCAGGTCGTGCGCGTGGATGCCCAGCGCGA 75218 Query 156412 CCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATG 156471 | | ||| ||| ||||| || ||||| || ||| |||| | || ||||| ||||| | Sbjct 75219 CGCGCATGAGCATGTGCTGCGGGCGCTCAACGATCTCTCCGTTTATCCGCAGCAGGTACG 75278 Query 156472 CGCGTTCCAGAGTTTTAAACCCGAAATAATC 156502 ||||||||| || || ||||| ||||| || Sbjct 75279 AGCGTTCCAGTGTCTTGAACCCAAAATAGTC 75309 >seq31 Length=163113 Score = 91.5 bits (100), Expect = 4e-13 Identities = 169/242 (70%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 302626 ACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGT 302685 || || || || || || || || || ||| |||| | |||||||| | ||| | || Sbjct 33245 ACGGCGGTGTCGATGAGGCCCACGCGGCCAGCCATGGAGTGGAAGAAGAACTCCTGTGG- 33187 Query 302686 CGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGG-GCGAA-TCGTCG 302742 ||| || ||| | | |||||| ||| ||||| || ||| ||| | ||| ||||| Sbjct 33186 CGTCAGGCCCTCGACGAAGGAGTGCTCCACGAAGCC--GCGGCTCTGCGCGCCGTCGTCA 33129 Query 302743 AACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCA 302802 ||||||||||||| |||||||||| ||| ||| |||||| ||||| || || Sbjct 33128 TACTTGGTAAAGTGCGGCAGGGTCCGGTTGTCAAAGCCGTCCGGGATGCGGCGGTTGTCG 33069 Query 302803 ACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAG 302862 | | ||||||| |||| |||| | ||||||| || || | | |||||||||| Sbjct 33068 ATGATCTGCTGGCCCACGCACCCCAGCATCTGCAGAAAGTTAATGGGGCCGCCCTTGGAG 33009 Query 302863 CC 302864 || Sbjct 33008 CC 33007 >seq34 Length=156822 Score = 86.0 bits (94), Expect = 2e-11 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 155629 TGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGT 155688 |||| || | ||||| ||||||||| || | |||||||||||| | |||| ||||| Sbjct 80891 TGTACTCGATGATCTCGGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTGGT 80950 Query 155689 TAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTG 155748 | || | ||| || || |||||||| || ||||| ||| | || ||||||| ||| | Sbjct 80951 TGCTCTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGGTTGCCCGTCTCCACCTGGG 81010 Query 155749 CGTCCAGAAT 155758 | ||||| || Sbjct 81011 CCTCCAGGAT 81020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471687670701930