Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq6015 789 0.0 seq3788 269 3e-67 >seq6015 Length=1491 Score = 789 bits (874), Expect = 0.0 Identities = 772/990 (78%), Gaps = 4/990 (0%) Strand=Plus/Minus Query 157579 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 157638 ||| || |||||| | ||||| || | ||||| | || ||||||||||||| ||| | Sbjct 1351 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAAT 1292 Query 157639 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157697 ||||| || ||| | | ||||| ||| || |||||| |||| ||| ||||||||| Sbjct 1291 CATGATCCCTTGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTC 1233 Query 157698 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 157757 | || || |||||||| || |||||||| || || ||||||| || | || ||||||| Sbjct 1232 CGCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACA 1173 Query 157758 ACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 157817 |||||||| | ||||| || | ||| |||| ||||| |||||| | |||||||| || | Sbjct 1172 ACATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAA 1113 Query 157818 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 157877 | |||||||| || | ||||| |||||| | || ||||||||||||| |||||| | | Sbjct 1112 TTTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCG 1053 Query 157878 TATTTCACTTCCTCATTGGTATCTA-TGCATACATGGGACGTGAGTGGGAACTTTCATAC 157936 | | ||||||||| | ||| | || ||| |||||||| |||||||||||| | || | | Sbjct 1052 TTTGTCACTTCCTTTTAGGTGTATACTGC-TACATGGGTCGTGAGTGGGAATTATCTTTC 994 Query 157937 CGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCT 157996 |||||||||||||| || |||||| ||| || || || |||||||| |||||||| Sbjct 993 CGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGC 934 Query 157997 GCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGT 158056 ||||||||| | || || || | || |||||||| ||||| |||| ||||||| | ||| Sbjct 933 GCTGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGT 874 Query 158057 ATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCAC 158116 ||| |||||||| |||| |||| | ||||||||||| || |||||||||||||||||| Sbjct 873 ATCAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCAC 814 Query 158117 CCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAC 158176 || ||||| ||| | ||||||||||| ||||| ||||| || | |||||||| |||||| Sbjct 813 CCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCAC 754 Query 158177 GGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTAC 158236 || | |||||||| || | | |||||||| ||||||| || ||| ||| | Sbjct 753 GGTTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 694 Query 158237 GGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTC 158296 |||||| || |||||||| ||||| || || |||||||| ||||| || || |||||| Sbjct 693 GGTTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTC 634 Query 158297 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 158356 |||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||| Sbjct 633 GGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTA 574 Query 158357 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTC 158416 ||||| ||||| ||| |||| || |||||||| || | || | || || ||||| ||| Sbjct 573 GCTGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTC 514 Query 158417 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 158476 ||||| |||||||||||||||||||| || | | || || |||||||| || ||| Sbjct 513 AACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAAC 454 Query 158477 ACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 158536 || |||||||| | | ||||| ||| | ||||||||||| ||||| ||||||||| Sbjct 453 ACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAAC 394 Query 158537 GCACACAACTTCCCACTCGACCTTGCTGCT 158566 || ||||||||||| || ||| | ||| || Sbjct 393 GCTCACAACTTCCCTCTAGACTTAGCTTCT 364 >seq3788 Length=5474 Score = 269 bits (298), Expect = 3e-67 Identities = 365/507 (72%), Gaps = 4/507 (1%) Strand=Plus/Minus Query 159807 CAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGTTGCTGGTATACTA 159866 ||||| || || |||||||| | || || ||||| |||||||| || |||||| | || Sbjct 2740 CAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCTGGTGTTTTA 2681 Query 159867 GGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGAT 159926 ||||| || || | |||| || || || | ||||||||| |||||| | | |||||| Sbjct 2680 GGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTCGAAGAT 2621 Query 159927 GGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTACTCT 159986 || || || || || || || || | | || || | || || |||||||| Sbjct 2620 GGTGACGGTGCTAACACGTTCCGTGCCTTCAACCCTACACAGGCTGAAGAAACTTACTCA 2561 Query 159987 ATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGG 160046 ||||| || |||||||| |||||||| || || || ||| | || || ||||||||||| Sbjct 2560 ATGGTAACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTCTCTAACAAGCGT 2501 Query 160047 TGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACA--TCCTCTATTG 160104 ||| | || ||||||||| | || || || || | ||| ||||||| | ||||| | Sbjct 2500 TGGTTACACTTCTTCATGCTTTTAGTTCCCGTGACGGGGCTTTGGATGAGTGCTCTA--G 2443 Query 160105 GCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAG 160164 | || |||| | |||||||| ||||||||||| || |||||| ||||| ||| | | Sbjct 2442 GTGTTGTTGGTTTAGCTCTTAACCTTCGTGCTTATGACTTCGTATCACAAGAAATCCGTG 2383 Query 160165 CAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACGAAGGAC 160224 | || ||||| || || || || || ||||| || ||||||||||| | |||||||| Sbjct 2382 CTGCTGAAGACCCTGAGTTCGAAACTTTCTATACTAAAAACATCCTTCTTAACGAAGGTA 2323 Query 160225 TACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAG 160284 | ||||| ||| |||| | || ||||| || ||| | | ||||| ||||||| Sbjct 2322 TCCGTGCTTGGATGGCTGCGCAAGACCAACCTCACGAACGTCTAGTATTCCCTGAAGAAG 2263 Query 160285 TATTGCCTAGAGGCAACGCCCTTTAAT 160311 |||| || | || ||||| || |||| Sbjct 2262 TATTACCGCGTGGTAACGCTCTATAAT 2236 Score = 230 bits (254), Expect = 3e-55 Identities = 344/486 (71%), Gaps = 8/486 (2%) Strand=Plus/Minus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365 ||||||||||| | ||| || || || ||||| || ||||| || || ||||| | Sbjct 4487 GATGACTGGCTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTCAGGTTTATTACTTTTC 4428 Query 159366 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 159425 || |||||| | || | || |||||| | ||||| ||| |||| || || ||| Sbjct 4427 CCTTGTGCTTACTTTGCACTAGGTGGTTGGTTAACTGGTACAACTTTCGTAACATCATGG 4368 Query 159426 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGTC 159485 || || || ||| | |||| ||| || | || ||| |||||| | || |||||||| Sbjct 4367 TATACACATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCAGCTGTA 4308 Query 159486 TCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 159545 || || ||||| || ||||| || |||||||| | |||||||||| || |||| Sbjct 4307 TCAACACCTGCAAACAGTATGGCACACTCTCTTCTATTTGTTTGGGGTCCAGAAGCTCAA 4248 Query 159546 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGT 159605 || | ||| || ||||| |||||||| || |||||| || || || | |||||| Sbjct 4247 GGTGACTTCACACGTTGGTGTCAACTTGGTGGTTTATGGGCATTCGTAGCTTTACACGGT 4188 Query 159606 GCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATTGGTA-- 159663 || || | ||||||| || ||| | | ||||||||| | || ||| ||| ||| Sbjct 4187 GCTTTTTCATTAATTGGCTTTATGTTAAGACAGTTTGAAATTGCTCGT-TCA---GTAAA 4132 Query 159664 --TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTT 159721 | ||||| || || |||||||| ||||| | || ||| |||| ||||| || || Sbjct 4131 CTTACGTCCATATAACGCTATTGCTTTCTCAGCGCCAATTTCTGTATTTGTTGCTGTTTT 4072 Query 159722 CCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGC 159781 ||| || |||||||| ||||| || ||||||| || ||||| |||||| || || || Sbjct 4071 CCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGCTTTGGTGTAGCTGC 4012 Query 159782 AATCTT 159787 |||||| Sbjct 4011 AATCTT 4006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548327171254800