Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq6015 764 0.0 seq3788 300 2e-76 >seq6015 Length=1491 Score = 764 bits (846), Expect = 0.0 Identities = 766/989 (77%), Gaps = 4/989 (0%) Strand=Plus/Minus Query 150839 TTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCTG 150898 |||||||| ||| | || || ||| | |||||| | || |||||||||||||||| | Sbjct 1350 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 1291 Query 150899 ATGATTCCAACTCTGTTGGCAGCAACCATTTGC-TTCATCGTGGCATTCATCGCTGCTCC 150957 ||||| || ||| | | ||||| || | |||||| | || |||||||||||||| Sbjct 1290 ATGATCCCTTGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCC 1232 Query 150958 CCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAA 151017 || || ||||||||||| |||||||| || || |||||||||| | ||||||||||| Sbjct 1231 GCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACAA 1172 Query 151018 CATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCAT 151077 ||||||| | |||||||| | || ||||||||||||| ||| | |||||||| || || Sbjct 1171 CATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAAT 1112 Query 151078 CTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 151137 |||||||| || |||| || || ||| | |||||||||||||||| |||||| | || Sbjct 1111 TTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCGT 1052 Query 151138 CTTCCACTTCCTGATTGGTATCTA-TGCTTACATGGGTCGTGAGTGGGAACTGTCTTACC 151196 | |||||||| | ||| | || |||| |||||||||||||||||||| | |||| || Sbjct 1051 TTGTCACTTCCTTTTAGGTGTATACTGCT-ACATGGGTCGTGAGTGGGAATTATCTTTCC 993 Query 151197 GCTTGGGTATGCGTCCCTGGATCTGCGTTGCATACTCTGCTCCAGTTGCTGCTGCGAGTG 151256 | || ||||||||||| |||||| ||||| ||||| |||||||| ||||| || || | Sbjct 992 GTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGCG 933 Query 151257 CAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGGTA 151316 | || ||| | || || || | || |||||||| ||||| |||| ||||| | |||| Sbjct 932 CTGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGTA 873 Query 151317 TTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCACC 151376 | || || ||||||| |||| | || |||||||| ||||||||||| || ||||||| Sbjct 872 TCAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACC 813 Query 151377 CCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCACG 151436 | ||||| ||| | ||||| |||||||| || ||||| || | ||||| |||||||||| Sbjct 812 CATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACG 753 Query 151437 GTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTATG 151496 |||| | |||||||| ||| | | ||||| || || |||||||| || ||| | | Sbjct 752 GTTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAG 693 Query 151497 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTTTG 151556 ||||| || |||||||||||||| || ||||||||||| || || ||||||||||| | Sbjct 692 GTTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTCG 633 Query 151557 GTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCG 151616 ||||| | ||||||||||||||||| |||||||| || ||||| | ||||||||||| | Sbjct 632 GTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTAG 573 Query 151617 CAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTCA 151676 | || ||||| ||| ||||||| |||||||| || | ||| | || ||||| |||| Sbjct 572 CTGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTCA 513 Query 151677 ACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACA 151736 |||| |||||||||||||||||||| || | | || || || || | |||| Sbjct 512 ACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAACA 453 Query 151737 CCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATG 151796 | ||||||||| | | |||||||| | ||||||||||| |||||||||||||| | Sbjct 452 CTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACG 393 Query 151797 CTCACAACTTCCCTCTCGACCTTGCTGCT 151825 |||||||||||||||| ||| | ||| || Sbjct 392 CTCACAACTTCCCTCTAGACTTAGCTTCT 364 >seq3788 Length=5474 Score = 300 bits (332), Expect = 2e-76 Identities = 369/502 (74%), Gaps = 4/502 (1%) Strand=Plus/Minus Query 152872 CAAGGATTCCACAACTGGACATTGAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTG 152931 ||||| ||||| ||||||||| |||| || || || ||||||||||| || ||| |||| Sbjct 2740 CAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCTGGTGTTTTA 2681 Query 152932 GGAGGGGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATCAAGAT 152991 || || || || | | ||| ||||| |||| ||| ||||| || || || | ||||| Sbjct 2680 GGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTCGAAGAT 2621 Query 152992 GGTGAACAAGCAAACACTTTCAAAGCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCG 153051 ||||| || ||||| ||| || ||| || || || | ||||| || || || Sbjct 2620 GGTGACGGTGCTAACACGTTCCGTGCCTTCAACCCTACACAGGCTGAAGAAACTTACTCA 2561 Query 153052 ATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGC 153111 ||||| || || |||||||||||||| || || ||||| | ||||| || || || Sbjct 2560 ATGGTAACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTCTCTAACAAGCGT 2501 Query 153112 TGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGA 153171 ||| | || ||||| ||||| || || || || | ||| ||||||| | || | || Sbjct 2500 TGGTTACACTTCTTCATGCTTTTAGTTCCCGTGACGGGGCTTTGGATGAGTGCTCTAGGT 2441 Query 153172 ATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCG 153231 | ||||| | ||||| || ||||||||||| || || ||||| ||||||||| | || Sbjct 2440 GTTGTTGGTTTAGCTCTTAACCTTCGTGCTTATGACTTCGTATCACAAGAAATCCGTGCT 2381 Query 153232 TCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTT 153291 | ||||| ||||| || || || |||||||| || || |||||| | ||||||||| | Sbjct 2380 GCTGAAGACCCTGAGTTCGAAACTTTCTATACTAAAAACATCCTTCTTAACGAAGGTATC 2321 Query 153292 CGTGCTTGGTTGGCACCTGTTGACCAACCTCATGAGAACTTC--GTGTTCCCTGAAGAGG 153349 ||||||||| |||| | ||||||||||| || || || || ||||||||||| | Sbjct 2320 CGTGCTTGGATGGCTGCGCAAGACCAACCTCACGA--ACGTCTAGTATTCCCTGAAGAAG 2263 Query 153350 TATTGCCACGAGGCAACGCTCT 153371 |||| || || || |||||||| Sbjct 2262 TATTACCGCGTGGTAACGCTCT 2241 Score = 223 bits (246), Expect = 4e-53 Identities = 359/513 (70%), Gaps = 10/513 (2%) Strand=Plus/Minus Query 152356 TGGTTTGATGTCCTGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCT 152415 |||||||||| | ||||||||||| |||||||||||| ||||| |||||||| Sbjct 4502 TGGTTTGATGACGCTGATGACTGGCTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTCA 4443 Query 152416 GGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACT 152475 || | | ||||| || |||||| |||| | || |||||| | ||||| || ||| Sbjct 4442 GGTTTATTACTTTTCCCTTGTGCTTACTTTGCACTAGGTGGTTGGTTAACTGGTACAACT 4383 Query 152476 TTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTT 152535 |||| || |||||||| || || || || | ||| || | || || ||||| Sbjct 4382 TTCGTAACATCATGGTATACACATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 4323 Query 152536 CTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGG 152595 | ||||| || || || || || ||| | ||||| || |||||||| || | ||| Sbjct 4322 TTAACTGCAGCTGTATCAACACCTGCAAACAGTATGGCACACTCTCTTCTATTTGTTTGG 4263 Query 152596 GGTCCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTT 152655 ||||| || |||||||| || ||| | ||| ||| || || || | ||||| || Sbjct 4262 GGTCCAGAAGCTCAAGGTGACTTCACACGTTGGTGTCAACTTGGTGGTTTATGGGCATTC 4203 Query 152656 GTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCA 152715 || || | ||||| ||||| | |||| || || ||| | | ||||||||| | || Sbjct 4202 GTAGCTTTACACGGTGCTTTTTCATTAATTGGCTTTATGTTAAGACAGTTTGAAATTGCT 4143 Query 152716 CGTCTCATCGGTA----TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGT 152771 ||| || ||| | ||||| || || |||||||| ||||| | || || |||| Sbjct 4142 CGT----TCAGTAAACTTACGTCCATATAACGCTATTGCTTTCTCAGCGCCAATTTCTGT 4087 Query 152772 TTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCC-AT 152830 |||||| || || || || ||||| | |||||||| ||||||| || ||||| | Sbjct 4086 ATTTGTTGCTGTTTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCTAG 4027 Query 152831 CTTTCGGGGTCGCAGCAATCTTCCGATTCCTTC 152863 |||| || || || ||||||||||| ||| ||| Sbjct 4026 CTTT-GGTGTAGCTGCAATCTTCCGTTTCATTC 3995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549575063770800