Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq6015 708 0.0 seq3788 246 3e-60 >seq6015 Length=1491 Score = 708 bits (784), Expect = 0.0 Identities = 756/991 (76%), Gaps = 8/991 (1%) Strand=Plus/Minus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 |||||||||||| | || || ||||| || || | ||| | |||||||| ||||| | Sbjct 1350 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 1291 Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 72354 |||||||| |||||||| ||||| | | ||||| | || |||||||||||||| Sbjct 1290 ATGATCCCTTGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCG 1231 Query 72355 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACAA 72413 ||||| || ||||| || ||| | || ||||| | |||||| ||||| || |||||||| Sbjct 1230 CCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTT-TACGGTAACAA 1172 Query 72414 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 72473 ||||||| | ||||||||| | ||| |||| ||||| || || ||||||||||| || || Sbjct 1171 CATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAAT 1112 Query 72474 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTAT 72533 |||||||| || ||| | ||||||||||| || ||||| ||||||||||| || | | Sbjct 1111 TTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCGT 1052 Query 72534 TTTCCACTTCCTTATTGGAATCT-CTGCCTACATGGGTAGACAGTGGGAACTATCATACA 72592 || ||||||||| | || | | |||| ||||||||| | |||||||| |||| | | Sbjct 1051 TTGTCACTTCCTTTTAGGTGTATACTGC-TACATGGGTCGTGAGTGGGAATTATCTTTCC 993 Query 72593 GACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTG 72652 | |||| ||| | || ||||| ||| || |||||||| || ||| ||||||| | Sbjct 992 GTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGCG 933 Query 72653 CAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTA 72712 | |||||| | || || ||| | || || ||||||||||| ||||||||||| |||||| Sbjct 932 CTGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGTA 873 Query 72713 TCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACC 72772 || ||||| |||||||||||| |||| |||||||| || |||||||| || ||||||| Sbjct 872 TCAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACC 813 Query 72773 CCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACG 72832 | ||||| ||| |||||| || ||| | || |||||| | ||| ||||||||||| Sbjct 812 CATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACG 753 Query 72833 GTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCA--AAACTA 72890 ||||| | ||||||||||| ||||| | || ||||| || ||| || ||| ||| | Sbjct 752 GTTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAAC--GAATCAGCTAACGA 695 Query 72891 CGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTT 72950 || || || || ||||||||||||||||| ||||| || || ||||| || ||||| Sbjct 694 AGGTTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTT 635 Query 72951 CGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCT 73010 |||| | ||||||||||| || || ||||||||||||||||||||||||||||||||||| Sbjct 634 CGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCT 575 Query 73011 CGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATT 73070 |||| | || || || || | ||||| || | | ||| | | || ||||| || Sbjct 574 AGCTGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTT 515 Query 73071 CAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACC 73130 |||||||||||| |||||||||||||||||||||||||| || | || | || Sbjct 514 CAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAA 455 Query 73131 AACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAA 73190 || |||| ||| | | ||| | || ||| | || |||||||| ||||| || | || Sbjct 454 CACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAA 395 Query 73191 TGCACACAACTTCCCACTAGACCTAGCATCT 73221 || ||||||||||| |||||| |||| ||| Sbjct 394 CGCTCACAACTTCCCTCTAGACTTAGCTTCT 364 >seq3788 Length=5474 Score = 246 bits (272), Expect = 3e-60 Identities = 372/533 (70%), Gaps = 21/533 (4%) Strand=Plus/Minus Query 73869 TATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCATATGATGGGTGTAGCAG 73928 |||| | || |||||||| || || || || ||||| || |||||||||||||| | Sbjct 2748 TATTTTTCCAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCTG 2689 Query 73929 GTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAACAGTACAGAACACATTGT 73988 || | | ||||| || ||| ||||||| || || ||||| || ||| | |||||||| | Sbjct 2688 GTGTTTTAGGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTAT 2629 Query 73989 ATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCTACAACTTTCAGAGCATTCG 74048 ||||| ||| ||| ||| || ||| | || ||| Sbjct 2628 TCGAAGATGG------------TGACGGTG---------CTAACACGTTCCGTGCCTTCA 2590 Query 74049 ATCCTACACAGGAAGAAGAGACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGA 74108 | |||||||||| ||||| ||||| ||| | || || ||| | ||||||||||| | Sbjct 2589 ACCCTACACAGGCTGAAGAAACTTACTCAATGGTAACAGCAAACCGTTTCTGGTCACAAA 2530 Query 74109 TATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTG 74168 | |||||| |||| || || ||||| | | ||||||||| | ||| | || || || | Sbjct 2529 TTTTTGGTGTAGCTTTCTCTAACAAGCGTTGGTTACACTTCTTCATGCTTTTAGTTCCCG 2470 Query 74169 TCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAGCACTTAACCTTAGAGCAT 74228 | | ||| | |||| || ||||| | || ||| |||| ||||||||| | || | Sbjct 2469 TGACGGGGCTTTGGATGAGTGCTCTAGGTGTTGTTGGTTTAGCTCTTAACCTTCGTGCTT 2410 Query 74229 ACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACA 74288 | ||||| ||||| ||||| || | || || |||||||| ||||| ||||| ||||| | Sbjct 2409 ATGACTTCGTATCACAAGAAATCCGTGCTGCTGAAGACCCTGAGTTCGAAACTTTCTATA 2350 Query 74289 CTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTCGATCAACCCC 74348 |||| ||||| |||||||| |||||||| | || |||||| | | || ||||| | Sbjct 2349 CTAAAAACATCCTTCTTAACGAAGGTATCCGTGCTTGGATGGCTGCGCAAGACCAACCTC 2290 Query 74349 ATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCACTATAA 74401 | || | || ||||| |||||||| || || || || ||||| |||||| Sbjct 2289 ACGAACGTCTAGTATTCCCTGAAGAAGTATTACCGCGTGGTAACGCTCTATAA 2237 Score = 214 bits (236), Expect = 2e-50 Identities = 349/503 (69%), Gaps = 0/503 (0%) Strand=Plus/Minus Query 73360 ATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTC 73419 ||||||||| | |||||| ||| || ||| ||||||||||| | || ||||| Sbjct 4503 ATGGTTTGATGACGCTGATGACTGGCTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTC 4444 Query 73420 TGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTAC 73479 ||| | |||||||| |||||||||||| | ||| | || |||||||| || || || Sbjct 4443 AGGTTTATTACTTTTCCCTTGTGCTTACTTTGCACTAGGTGGTTGGTTAACTGGTACAAC 4384 Query 73480 TTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTT 73539 |||||| || |||||||| ||||||||| | || | || || | || || || || Sbjct 4383 TTTCGTAACATCATGGTATACACATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 4324 Query 73540 TTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTG 73599 ||||||||||| ||||||||||||| | ||||| || ||| | || |||| Sbjct 4323 CTTAACTGCAGCTGTATCAACACCTGCAAACAGTATGGCACACTCTCTTCTATTTGTTTG 4264 Query 73600 GGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTT 73659 ||| ||||| || ||||| || | ||| |||| |||| | ||||| ||||| || Sbjct 4263 GGGTCCAGAAGCTCAAGGTGACTTCACACGTTGGTGTCAACTTGGTGGTTTATGGGCATT 4204 Query 73660 TGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGC 73719 ||||| ||||| || | ||| | | || || || ||| | ||||||||||| ||||| Sbjct 4203 CGTAGCTTTACACGGTGCTTTTTCATTAATTGGCTTTATGTTAAGACAGTTTGAAATTGC 4144 Query 73720 AGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATT 73779 | || ||||||| || ||||| | ||||| ||||| || | ||||| Sbjct 4143 TCGTTCAGTAAACTTACGTCCATATAACGCTATTGCTTTCTCAGCGCCAATTTCTGTATT 4084 Query 73780 CACGAGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATT 73839 | || ||||| || || ||||| || |||||||||| || ||| || Sbjct 4083 TGTTGCTGTTTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGCTT 4024 Query 73840 CGGTGTCGCAGCAATCTTTCGTT 73862 ||||| || |||||||| |||| Sbjct 4023 TGGTGTAGCTGCAATCTTCCGTT 4001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572824261261200