Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq367 102 5e-17 seq4034 98.7 6e-16 seq589 84.2 1e-11 >seq367 Length=69066 Score = 102 bits (112), Expect = 5e-17 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | ||||||||||||||||||||| ||||| | || |||| | || Sbjct 68820 CAGCACCAGGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGCCAGAGTGCGGCCGTC 68879 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| |||||||||||||| || |||||||| Sbjct 68880 CTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 68918 >seq4034 Length=4767 Score = 98.7 bits (108), Expect = 6e-16 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||||||||||||| ||||| ||||||| ||| ||||| |||| Sbjct 1995 CAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGCTAGCGTGCGCCCATC 1936 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 || || ||||| ||||| ||||| || || |||||||| Sbjct 1935 CTCGAGCTGCTTCCCGGCAAAGATTAGCCGCTGCTGGTC 1897 >seq589 Length=52745 Score = 84.2 bits (92), Expect = 1e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||||||||||||| ||||| ||||| | || ||||| | || Sbjct 25590 CAGCACCAGGTGTAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCGTC 25531 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 || |||||||| || || ||||| || || |||||||| Sbjct 25530 CTCGAGTTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTC 25492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325665450964910