Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq6015 717 0.0 seq3788 260 2e-64 >seq6015 Length=1491 Score = 717 bits (794), Expect = 0.0 Identities = 755/991 (76%), Gaps = 2/991 (0%) Strand=Plus/Minus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 || || |||||| | ||||| || | |||||||| || | |||||||||||||| | Sbjct 1350 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 1291 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGC-TTCATTGTTGCATTCGTAGCAGCACC 157169 ||||| || | ||| | ||||| ||| | ||||| | || ||| | || || || Sbjct 1290 ATGATCCCTTGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCC 1232 Query 157170 TCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAA 157229 || || || ||||| ||||| || || ||||| |||||||||| | || || ||||| Sbjct 1231 GCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACAA 1172 Query 157230 CATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCAT 157289 ||||||| | ||||| || | || |||| ||||| || ||| | ||||||||||| || Sbjct 1171 CATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAAT 1112 Query 157290 CTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGT 157349 |||||||| || | ||||| |||||| | |||||||||||||||| |||||| | || Sbjct 1111 TTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCGT 1052 Query 157350 CTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 157409 | ||||||||| | || | || ||| ||||| |||||||||||| | |||| ||| Sbjct 1051 TTGTCACTTCCTTTTAGGTGTATACTGCTACATGGGTCGTGAGTGGGAATTATCTTTCCG 992 Query 157410 TTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGC 157469 |||||||||||| || |||||| |||||| ||||| || ||||| ||||| || || || Sbjct 991 TTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGCGC 932 Query 157470 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 157529 |||||| | || || || | || |||||||| ||||| |||| ||||||| | ||||| Sbjct 931 TGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGTAT 872 Query 157530 CTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCC 157589 | |||||||| |||| ||| |||| ||||| || |||||||| || |||||||| || Sbjct 871 CAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 812 Query 157590 GTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGG 157649 ||||||||| | || |||||||| ||||| ||||| || || |||||||| |||||||| Sbjct 811 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGG 752 Query 157650 AAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAAACAGAGTCACAGAACTATGG 157709 | |||||||| ||| | | |||||||||||||||| || ||| ||| | || Sbjct 751 TTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAGG 692 Query 157710 TTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTCGG 157769 |||| || |||||||||||||| || ||||||||||| || || |||||||||||||| Sbjct 691 TTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTCGG 632 Query 157770 TCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTCGC 157829 ||| | ||||||||||||||||||||||||||| | | ||||||||||| || Sbjct 631 TCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTAGC 572 Query 157830 CGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAA 157889 || ||||| ||| |||| || |||||||| || | || | || ||||| ||||| Sbjct 571 TGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTCAA 512 Query 157890 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 157949 ||| |||||||||||||||||||| || | | || || |||||||| || ||||| Sbjct 511 CCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAACAC 452 Query 157950 CTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGC 158009 |||||||| || | ||||| ||| | ||||||||||| ||||| ||||||||||| Sbjct 451 TTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGC 392 Query 158010 ACACAACTTCCCACTGGATCTTGCTGCTGCA 158040 ||||||||||| || || | ||| || || Sbjct 391 TCACAACTTCCCTCTAGACTTAGCTTCTTCA 361 >seq3788 Length=5474 Score = 260 bits (288), Expect = 2e-64 Identities = 356/497 (72%), Gaps = 0/497 (0%) Strand=Plus/Minus Query 159288 CAAGGGTTCCACAATTGGACACTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTA 159347 ||||| ||||| || |||||||| ||||| ||||| |||||||| || |||||| | || Sbjct 2740 CAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCTGGTGTTTTA 2681 Query 159348 GGTGGAGCACTTCTATCTGCTATTCATGGGGTCACAGTTGAAAATACATTATACGAGGAT 159407 ||||| || | ||| ||||||||| || | || || ||||| ||||||| ||| ||| Sbjct 2680 GGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTCGAAGAT 2621 Query 159408 GGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCT 159467 || || || ||||| || || || | | || || | || || ||||| || Sbjct 2620 GGTGACGGTGCTAACACGTTCCGTGCCTTCAACCCTACACAGGCTGAAGAAACTTACTCA 2561 Query 159468 ATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGG 159527 ||||| || |||||||| |||||||| || || || || | || || ||||||||||| Sbjct 2560 ATGGTAACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTCTCTAACAAGCGT 2501 Query 159528 TGGCTTCATTTCTTTATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCAGTATTGGC 159587 ||| | || ||||| ||| | || || || || | ||| || |||| | | || Sbjct 2500 TGGTTACACTTCTTCATGCTTTTAGTTCCCGTGACGGGGCTTTGGATGAGTGCTCTAGGT 2441 Query 159588 ATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCA 159647 || ||||| | ||||| || ||||||||||| || ||||| ||||| ||| | || Sbjct 2440 GTTGTTGGTTTAGCTCTTAACCTTCGTGCTTATGACTTCGTATCACAAGAAATCCGTGCT 2381 Query 159648 GCAGAAGATCCAGAATTTGAAACGTTCTACACCAAGAACATTCTTCTGAATGAAGGACTA 159707 || ||||| || || || ||||| ||||| || || ||||| ||||| || ||||| | Sbjct 2380 GCTGAAGACCCTGAGTTCGAAACTTTCTATACTAAAAACATCCTTCTTAACGAAGGTATC 2321 Query 159708 CGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTT 159767 ||||||||| |||| | || ||||| || ||| | | ||||| |||||||| Sbjct 2320 CGTGCTTGGATGGCTGCGCAAGACCAACCTCACGAACGTCTAGTATTCCCTGAAGAAGTA 2261 Query 159768 CTACCAAGAGGTAACGC 159784 |||| | |||||||| Sbjct 2260 TTACCGCGTGGTAACGC 2244 Score = 215 bits (238), Expect = 6e-51 Identities = 358/511 (70%), Gaps = 12/511 (2%) Strand=Plus/Minus Query 158771 ATGGTTTGACATACTC-GACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGT 158829 ||||||||| || | || |||||||| | || |||||||| ||||| || |||| Sbjct 4503 ATGGTTTGATG-ACGCTGATGACTGGCTACGTCAAGACCGTTTCGTATTTGTAGGTTGGT 4445 Query 158830 CTGGACTTCTTCTTCTACCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGA 158889 | || | | ||| | || |||||| |||| | || |||||| | ||||| || | Sbjct 4444 CAGGTTTATTACTTTTCCCTTGTGCTTACTTTGCACTAGGTGGTTGGTTAACTGGTACAA 4385 Query 158890 CTTTCGCTACGAGCTGGTATACACATGGACTCGCTACTTCCTATCTTGAGGGTGCAAACT 158949 |||||| || |||||||||||||| | |||||||| || | || ||| |||| Sbjct 4384 CTTTCGTAACATCATGGTATACACATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACT 4325 Query 158950 TTCTTACAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCT 159009 | | || ||||| || || || || || | ||||| || |||||||| || | | Sbjct 4324 TCTTAACTGCAGCTGTATCAACACCTGCAAACAGTATGGCACACTCTCTTCTATTTGTTT 4265 Query 159010 GGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGGT-CCAACTTGGGGGACTCTGGAAT 159068 ||||||| || |||||||| || ||| || || ||| |||||||| || | ||| Sbjct 4264 GGGGTCCAGAAGCTCAAGGTGACTTC-ACACGTTGGTGTCAACTTGGTGGTTTATGGGCA 4206 Query 159069 TTTGTGGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACTG 159128 || || || | |||||||| ||| | ||||||| || ||| | | ||||||||| | Sbjct 4205 TTCGTAGCTTTACACGGTGCTTTTTCATTAATTGGCTTTATGTTAAGACAGTTTGAAATT 4146 Query 159129 GCACGTCTCATCGGTA----TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGC 159184 || ||| || ||| | ||||| || || |||||||| ||||| | || ||| | Sbjct 4145 GCTCGT----TCAGTAAACTTACGTCCATATAACGCTATTGCTTTCTCAGCGCCAATTTC 4090 Query 159185 TGTTTTTGTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCC 159244 ||| ||||| || ||||| || |||||| | ||||| || ||||||| || ||||| Sbjct 4089 TGTATTTGTTGCTGTTTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCTCC 4030 Query 159245 GTCCTTTGGGGTGGCCGCAATATTCAGGTTC 159275 |||||| || || ||||| ||| | ||| Sbjct 4029 TAGCTTTGGTGTAGCTGCAATCTTCCGTTTC 3999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545226638311200