Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq6015 717 0.0 seq3788 311 1e-79 >seq6015 Length=1491 Score = 717 bits (794), Expect = 0.0 Identities = 751/980 (77%), Gaps = 5/980 (1%) Strand=Plus/Minus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 || || |||||| | ||||| || | ||||| | || ||||||||||||| ||| | Sbjct 1350 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 1291 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCC 177676 ||||| || ||| | | ||||| ||| | |||||| |||| ||| |||||||||| Sbjct 1290 ATGATCCCTTGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCC 1232 Query 177677 CCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 177736 || || |||||||| || |||||||| || || ||||||| || | || |||||||| Sbjct 1231 GCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACAA 1172 Query 177737 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 177796 ||||||| | ||||| || | ||| |||| ||||| |||||| | |||||||| || || Sbjct 1171 CATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAAT 1112 Query 177797 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 177856 |||||||| || | ||||| |||||| | || ||||||||||||| |||||| | || Sbjct 1111 TTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCGT 1052 Query 177857 CTTTCACTTCCTTATCGGCATCTA-TGCATATATGGGACGTGAGTGGGAACTTTCATACC 177915 | |||||||||| | || | || ||| || ||||| |||||||||||| | || | || Sbjct 1051 TTGTCACTTCCTTTTAGGTGTATACTGC-TACATGGGTCGTGAGTGGGAATTATCTTTCC 993 Query 177916 GTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCG 177975 || |||||||||| || |||||| |||||| ||||| || || || || ||||| || Sbjct 992 GTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGCG 933 Query 177976 CAGTCTTTCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTA 178035 | || || |||| || || | || |||||||||||||| |||| ||||||| | |||| Sbjct 932 CTGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGTA 873 Query 178036 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACC 178095 || |||||||| |||| |||| | ||||||||||| || ||||| ||||||||||||| Sbjct 872 TCAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACC 813 Query 178096 CGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 178155 | ||||||||| | ||||||||||| ||||| ||||| || | |||||||| ||||| | Sbjct 812 CATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACG 753 Query 178156 GAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAACTGAGTCCCAGAACTATG 178215 | | |||||||| ||| | ||||||| || || |||| || || ||| | | Sbjct 752 GTTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAG 693 Query 178216 GTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTCG 178275 ||||| || || ||||||||||||||||| |||||||| ||||| || |||||||||| Sbjct 692 GTTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTCG 633 Query 178276 GTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCTCG 178335 ||||||| ||||||||||| || || ||||||||||| |||||| | ||||||||||| | Sbjct 632 GTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTAG 573 Query 178336 CAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATTTA 178395 | || ||||| || | || || |||||||| || | ||| | || || ||||| || | Sbjct 572 CTGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTCA 513 Query 178396 ACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACA 178455 |||| || || |||||||||||||| || | | ||| |||||| ||||| | |||| Sbjct 512 ACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAACA 453 Query 178456 CATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAAAGAAATA 178515 | ||||||||| | |||||||||| | || |||||||| |||||||| | || Sbjct 452 CTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAA-C 394 Query 178516 GCACATAACTTCCCGCTTGA 178535 || || |||||||| || || Sbjct 393 GCTCACAACTTCCCTCTAGA 374 >seq3788 Length=5474 Score = 311 bits (344), Expect = 1e-79 Identities = 378/515 (73%), Gaps = 0/515 (0%) Strand=Plus/Minus Query 179443 CTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGATGGGAGTTGCA 179502 || || || ||||||||||| ||||||||||| ||||| || ||||||||||| || || Sbjct 2749 CTATTTTTCCAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCT 2690 Query 179503 GGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGAGAATACATTG 179562 ||| | | ||||||||| | | | ||||||||| || | |||||||| || ||||| Sbjct 2689 GGTGTTTTAGGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTA 2630 Query 179563 TATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCTACGCAAGAGGAGGAG 179622 | |||||||| || || ||||| || || ||| || |||| || | || || Sbjct 2629 TTCGAAGATGGTGACGGTGCTAACACGTTCCGTGCCTTCAACCCTACACAGGCTGAAGAA 2570 Query 179623 ACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTCGGGGTTCCGTTTAGC 179682 || || || ||||| ||||| |||||||| ||||| || || || || || | || Sbjct 2569 ACTTACTCAATGGTAACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTCTCT 2510 Query 179683 AATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCT 179742 || ||||||||||| |||||||| | ||| || ||||| || | ||| |||||| | | Sbjct 2509 AACAAGCGTTGGTTACACTTCTTCATGCTTTTAGTTCCCGTGACGGGGCTTTGGATGAGT 2450 Query 179743 TCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAG 179802 || | || | |||| |||||||||| |||||||||||||| || || ||||| Sbjct 2449 GCTCTAGGTGTTGTTGGTTTAGCTCTTAACCTTCGTGCTTATGACTTCGTATCACAAGAA 2390 Query 179803 ATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAAGAACATTCTTCTGAAT 179862 ||| | || || ||||| ||||||||||| || |||||||| || ||||| ||||| || Sbjct 2389 ATCCGTGCTGCTGAAGACCCTGAGTTCGAAACTTTCTATACTAAAAACATCCTTCTTAAC 2330 Query 179863 GAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCA 179922 ||||| | ||||||||| |||| | || ||||| || ||| | | ||||| Sbjct 2329 GAAGGTATCCGTGCTTGGATGGCTGCGCAAGACCAACCTCACGAACGTCTAGTATTCCCT 2270 Query 179923 GAAGAAGTCCTACCTAGTGGTAACGCACTGTGATT 179957 |||||||| |||| |||||||||| || | ||| Sbjct 2269 GAAGAAGTATTACCGCGTGGTAACGCTCTATAATT 2235 Score = 235 bits (260), Expect = 7e-57 Identities = 353/501 (70%), Gaps = 8/501 (2%) Strand=Plus/Minus Query 178936 TGGTTCGATGTCTTGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCT 178995 ||||| |||| | ||||||||||| || || || || || ||||| |||||||| Sbjct 4502 TGGTTTGATGACGCTGATGACTGGCTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTCA 4443 Query 178996 GGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCT 179055 || | ||||| | || |||||| |||| | || |||||| | ||||| ||| || Sbjct 4442 GGTTTATTACTTTTCCCTTGTGCTTACTTTGCACTAGGTGGTTGGTTAACTGGTACAACT 4383 Query 179056 TTTGTTACGAGTTGGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTT 179115 || || || ||||| || |||||| | |||| ||| || | |||||| |||||| Sbjct 4382 TTCGTAACATCATGGTATACACATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 4323 Query 179116 CTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGG 179175 | || |||||||| || || ||||| | ||||| || |||||||| | ||||| Sbjct 4322 TTAACTGCAGCTGTATCAACACCTGCAAACAGTATGGCACACTCTCTTCTATTTGTTTGG 4263 Query 179176 GGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTC 179235 ||||| || |||| || | ||| || ||||| |||||||| || ||||| ||| Sbjct 4262 GGTCCAGAAGCTCAAGGTGACTTCACACGTTGGTGTCAACTTGGTGGTTTATGGGCATTC 4203 Query 179236 GTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCA 179295 || ||| | |||||||| || | ||||||| || ||| | | ||||||||| | || Sbjct 4202 GTAGCTTTACACGGTGCTTTTTCATTAATTGGCTTTATGTTAAGACAGTTTGAAATTGCT 4143 Query 179296 CGTCTCATCGGTA----TCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGT 179351 ||| || ||| | ||||| || || || |||||||| | | || ||| | || Sbjct 4142 CGT----TCAGTAAACTTACGTCCATATAACGCTATTGCTTTCTCAGCGCCAATTTCTGT 4087 Query 179352 ATTCGTTAGTGTATTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATC 179411 ||| ||| ||| || || || |||||| | || ||||| ||||||||||||| || Sbjct 4086 ATTTGTTGCTGTTTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCTAG 4027 Query 179412 GTTTGGTGTTGCGGCGATCTT 179432 |||||||| || || ||||| Sbjct 4026 CTTTGGTGTAGCTGCAATCTT 4006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605615036912400