Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq222 284 1e-71 seq34 138 1e-27 seq3574 102 8e-17 seq32 89.7 5e-13 seq589 86.0 6e-12 >seq222 Length=84561 Score = 284 bits (314), Expect = 1e-71 Identities = 646/965 (67%), Gaps = 24/965 (2%) Strand=Plus/Plus Query 148803 ACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCG 148862 |||| |||||| | || || || || || ||||| || |||||||| || ||| | Sbjct 74363 ACGACGCATCGAGGAAGCGCAATGGACGCCAGGTTGCAGACCGCCGTCTCGTCGGGGCTG 74422 Query 148863 CTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGA 148922 ||||||| | |||||| | ||| || |||||||| ||||| ||||| | | || Sbjct 74423 GTGTACTCGAGGATCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATGTTGCTGG 74482 Query 148923 TTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGC 148982 |||||||||| |||||| | |||||||| ||||||||||| || || || | |||| Sbjct 74483 TTGCTCTTGCGGTTGCAGGAATCCTTGTATAGCATGTACGGGGTACCCGTCTCGATCTGC 74542 Query 148983 GTTTCCACTATG--AACCGATGCAGGTCCTGCGCGCGCA-CTTGCTGCTCGTAGCGACCC 149039 | |||| ||| || | | ||| | ||| ||||| | | | ||| || | || ||| Sbjct 74543 GCATCCAGGATGGCAAACCA--CAGCTGCTGGGCGCGGATCGTCTTGCGCGCA-CGCCCC 74599 Query 149040 TCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCG 149099 || ||||||| || || |||||||| ||| | ||||| |||| || | || || Sbjct 74600 TCGCGCTCGTAGCGCGTGTAGAGCCGCTCAAACTCGTCGCCCCAGCAGTCCGCTAGTCCA 74659 Query 149100 GGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAAC 149159 || || || ||||| | |||||||||| | | ||||| | || |||| ||| || Sbjct 74660 GGCGCCTCGTTGGGGCAAAAGAGCGACCACTCCGCATCCGCCTCGACCCGCTGCATGAAG 74719 Query 149160 AGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATG 149219 || ||| ||||| | || | | ||| ||||| | || || || | Sbjct 74720 AGGTCGTTGACCCACATGGCAAGGAACAAGTCCCGCGCGCGCGACTCCTCTTTCCCGTGG 74779 Query 149220 TTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCG 149279 || |||||| | || | | || ||||| |||||||| ||||| | ||| | || Sbjct 74780 TTCTTGCGCAGCTCGATGAAGTCAAAAATGTCAGCGTGCCAGGGCTCCAGGTAAATGGCA 74839 Query 149280 AGCGCGCCCTTGCGCTT---GCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACT 149336 | ||| ||||||||||| ||| |||||||| |||| ||| || ||| |||||| || Sbjct 74840 AACGCCCCCTTGCGCTTTCCGCCCCCCTGGTCCACGTAACGCGCCGTGTCGTTAAAGACG 74899 Query 149337 CGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGC 149396 || | ||| ||| | ||||| ||| |||||||| || || || |||| Sbjct 74900 CGCAGCATGGGTACGATGCCGTTGGACGTGCCGTTGGTGCCGCGGATATAGGAGCCGGTG 74959 Query 149397 GCTCGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAG 149456 || || | | ||| | | | ||||||||| || ||| ||| || ||| ||||||| Sbjct 74960 GCACGGATGTCGTGAATGGACAGGCCGATGCCACCCGCGTTCTTGGAAATGACCGCGCAC 75019 Query 149457 TCGCCGAGCGTCGAGTAGATGCCCTCGATGCTG---------TCGCGCTTCATGGTCAGC 149507 || |||||| || ||||||||||||||| |||| ||||||| || | Sbjct 75020 TCTTTGAGCGTGTCATAAATGCCCTCGATGCTGTCGCAGCCATCGCCCTTCATGTGCACC 75079 Query 149508 AGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCG 149567 || |||||||||| ||| || || ||||||| | ||| | ||||| ||| Sbjct 75080 AGGAAGCACGAGCTCATCTGAGGGCGCGGCGTGCCAGAGTTGAAGAGCGTGGGCGACGCG 75139 Query 149568 TGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCG 149627 || || ||| || ||||| | |||| ||||| ||| |||| ||| | Sbjct 75140 TGCGTGAAACGGCGCTCCGACATCAGGTGATACGTCTCGATGGCGCTCTCCAGGTCGTGC 75199 Query 149628 CCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTC--CG-CCACTTTG 149684 | |||||||| | ||||||||||| ||||| |||||||| ||||| || | || | Sbjct 75200 GCGTGGATGCCCAGCGCGACGCGCATGAGCATGTGCTGCGGGCGCTCAACGATCTCTCCG 75259 Query 149685 TTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCA 149744 ||| || |||| ||| | ||| ||||||||| | ||||| || | ||| || Sbjct 75260 TTT---ATCCGCAGCAGGTACGAGCGTTCCAGTGTCTTGAACCCAAAATAGTCGTACTCG 75316 Query 149745 AAGTC 149749 |||| Sbjct 75317 TAGTC 75321 Score = 188 bits (208), Expect = 7e-43 Identities = 531/801 (66%), Gaps = 26/801 (3%) Strand=Plus/Plus Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGAC 148010 |||||||| |||||||||||||| || |||||| | ||||| ||||| ||| | |||| Sbjct 73448 GTGCGCAGGTAGTACATGCCCGTTTTCAGGCCCTTTCGCCAAGCGTAAAAGTGAAGCGAC 73507 Query 148011 GACATGAGCGTGTACGTCGGG-TGCGGCACAAACAGATTAAACGACTGGCTCTGGTCAAT 148069 | || || ||| |||||| || | ||| | || || ||| ||||||||||| Sbjct 73508 GTCAACTTCGAGTA-GTCGGGACTCGCAAGAAAGACGTTGAAACTCTGACTCTGGTCAAT 73566 Query 148070 GAACGCGCCACGGTCAGCGGCCATTTCAATGAG---TCGCTTTATCTTCATCTCCCAGGC 148126 ||| || || |||||| ||||| || | || |||| ||| ||||||||| | Sbjct 73567 GAATGCACCGCGGTCACATGCCATGTCGACCAGGGTGCGCT---GCTTGATCTCCCAGAC 73623 Query 148127 CGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCG 148186 || ||||| ||| |||||| | || | || | ||| ||| || || || Sbjct 73624 GGTTTTGTAGAGCTGCTTGAGGTCCTCCGAGATCTCAGGAATG-TCTG--CCACGCTGCC 73680 Query 148187 GTGCGCAAAAATCTGATTGCGCATTTCGTC-CGTGTATAGGTTGAGC--TCGA--TCAGG 148241 || |||| | ||| ||| || || || | | || | ||| ||||| Sbjct 73681 GTTCGCAGCGA--TGAGTGCATTCTTGATCGCGGGATTCCAGAGACCCTGCGAAGTCAGG 73738 Query 148242 TCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATAC 148301 |||| | ||| | | || || || |||||||| | ||| ||||||||| || Sbjct 73739 TCATGAAGCAGGTGCGAGTTGACAACGGTGAACTCGCCAGAGAGGACGCGCCGCGCGTAG 73798 Query 148302 ACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCC 148361 | |||||| || | || || |||||||| ||||||| | ||||||| |||| || Sbjct 73799 ATGTTGCTGGTGTAAGGCTCGAACGACTCCGTGTTGCCAAGGATCTGCGACGTCGAAGCG 73858 Query 148362 GTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTAT-TTTGCGCTT 148420 || |||||| || ||||||||||||||||||| ||| | | || | |||| Sbjct 73859 GTCGGCATGGGAGCCACCAGCAGCGAGTTGCGCAGCCCGTGCGCTGCAATGTCGGCGC-G 73917 Query 148421 CAGAGCCGCCCAGTCCCAG-AGCGGCGAC-----GGTGTCACGTTCCACATGTCGTACTG 148474 ||| || ||||||| || | || || || | | | |||||||||| | ||| Sbjct 73918 CAGGGCTTCCCAGTCAAAGTCGGGGTCACATGCAGGGGGCGGGCTCCACATGTCCTGCTG 73977 Query 148475 CAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGC 148534 ||| | ||||||||| | ||||| |||||||||| ||| | |||| | | ||| Sbjct 73978 CAGGACGCCGCGGCTGACCGGGCTCCCCTCGTACGTCTCGTAGGTGCCGTCCACTTTCGC 74037 Query 148535 CAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG 148594 ||| ||||| ||| || ||| | |||| || ||| || | | ||||||| Sbjct 74038 CAGGGCGCAGGATGCCGTCAGGGCGGCAAAGTAGATGCACTCAAAGATCTTCTTGTTGAG 74097 Query 148595 CAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCC 148654 | || || | ||| || || ||||||| | ||| | |||| ||| || || || Sbjct 74098 CTGCCGTGCTGCCTCACTCTCAAACGGCATGCCGAGCAAGATCAACGTGTCCGCCAGTCC 74157 Query 148655 CTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGG 148714 ||| | ||| | || ||||| || || |||||| | ||||||| |||| ||| Sbjct 74158 CTGGATGCCGATTCCGATGGGACGATGACGCATGTTGCTGCGGCGCGCCGTCTCCGTCGG 74217 Query 148715 ATAGTGGTTGCGGTCGATGAT 148735 |||| ||||||||| ||||| Sbjct 74218 GTAGTAGTTGCGGTCAATGAT 74238 >seq34 Length=156822 Score = 138 bits (152), Expect = 1e-27 Identities = 206/291 (71%), Gaps = 6/291 (2%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||| | |||||||| |||||| ||| ||| ||||| ||||| ||||| || | Sbjct 80891 TGTACTCGATGATCTCGGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTGGT 80950 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 ||||||||| |||||| |||||||||||||||||||| || ||| || |||||||| | Sbjct 80951 TGCTCTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGGTTGCCCGTCTCCACCTGGG 81010 Query 148984 TTTCCACTAT---GAACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCT 149040 |||| || ||||| ||| | |||||||||||| ||| | |||| Sbjct 81011 CCTCCAGGATGGCGAACC---ACAGCTGCTGCGCGCGCACCACGCGCTTGGCCTTGCCCT 81067 Query 149041 CCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGG 149100 | |||||| | |||||| ||||||| |||||| ||| ||| | || |||| Sbjct 81068 CGGACTCGTACTTGTTGTACAGCTCCTCGAACTTCTCGCCCCAGCTGTCGGCCAGGCCGG 81127 Query 149101 GGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCT 149151 |||| || ||||| | || |||| | | |||| | | |||||||| Sbjct 81128 CACACTCGTTGGGGCAGAACAGGCTCCACTCCCGGTCCTCCTCCACGCGCT 81178 Score = 123 bits (136), Expect = 2e-23 Identities = 158/215 (73%), Gaps = 12/215 (6%) Strand=Plus/Plus Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGAC 148010 ||||| || ||||||||||| |||||||||||| ||||||| |||||| ||||| ||| Sbjct 79116 GTGCGTAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCAGCGAG 79175 Query 148011 GACATGAGCGT---GTACGTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTCA 148067 | ||||| | | | | |||| |||| || | || || |||||||||||| Sbjct 79176 G---TGAGCTTGCCGAAGTTGGGGTCGGGCATGAAGACGTTGAAGCTCTGGCTCTGGTCG 79232 Query 148068 ATGAACGCGCCACGGTCAGCGGCCATTTCAATGAG---TCGCTTTATCTTCATCTCCCAG 148124 ||| | ||||| ||||| |||||||| || | || |||| ||| |||||||| Sbjct 79233 ATGTAGGCGCCGCGGTCGGCGGCCATGTCCACAAGCGTGCGCT---GCTTGATCTCCCAC 79289 Query 148125 GCCGTCTTGTACAGCCGCTTGATATGATCGGGAAT 148159 |||||||||||||| ||||| || ||||| || Sbjct 79290 ACCGTCTTGTACAGCGCCTTGAGCTGCTCGGGGAT 79324 Score = 102 bits (112), Expect = 8e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 148237 TCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCA 148296 ||||||| | | ||| | ||| || || || |||||||| | |||||||| |||| Sbjct 79583 TCAGGTCGTGCAGCAGGTGCTGGTTGACGACGGTGAACTCGCCCGACAGCACGCGGCGCA 79642 Query 148297 GATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCG 148356 || | |||| || | || ||||| ||||||||||||||| ||||| ||| Sbjct 79643 CGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGGCTGGTGC 79702 Query 148357 TTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCA 148395 | |||||||||||| ||| ||||||||||||||||||| Sbjct 79703 TGGCCGTGGGCATGGGCGCCACCAGCAGCGAGTTGCGCA 79741 >seq3574 Length=6273 Score = 102 bits (112), Expect = 8e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 |||||| || ||||| |||||||||||||||||| || ||||||||| || || Sbjct 5819 CAGGCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGT 5760 Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAA 120758 ||||||||||||| ||| | |||||| |||| |||| | ||| ||| || || Sbjct 5759 GAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAA 5700 Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGG 120799 || | |||||||||| || ||||| || | |||||||| Sbjct 5699 AAAGATGCCCTCCACGGCCGCGAAGGCCACGAGGCGCTCGG 5659 >seq32 Length=161680 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/225 (69%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 120642 GCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAG 120701 |||||||||||| ||| || |||||||| || || || ||||| || ||| || || Sbjct 59407 GCACGCAAAGTCGCAGTGTAGACCCTCGTCCCGAGAGATGAGCTCATTTGAAAAGGTGAG 59466 Query 120702 GCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAA 120761 || ||||||| || | |||| |||| |||||| || |||||| || || Sbjct 59467 CCCCGGCATGAGCCCGCGTTTTTTGAGCCAGAAGATGGCGCAGAATGAGCCCGAGAAAAA 59526 Query 120762 CACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTC 120821 | |||||| || ||||| || |||| |||| ||| ||| ||| | || || Sbjct 59527 GATGCCCTCGACCGCTGCAAATGCCACCAAGCGCCTGGCGAACACATCCGAC--GC-CTC 59583 Query 120822 GATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCAT 120866 ||||||||||| ||||| |||||||| | ||| || ||||| Sbjct 59584 GATCCACTTCAACGCCCATGTGGCCTTTTGGGTCACACATGGCAT 59628 >seq589 Length=52745 Score = 86.0 bits (94), Expect = 6e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGC 133517 |||| ||| ||| ||||| || ||||| ||| | | |||| | ||||||||| ||| Sbjct 25580 TGTAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCGTCCTCGAGTTGC 25521 Query 133518 TTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCT 133559 ||||| || | ||||||||||||||||| || ||||||||| Sbjct 25520 TTGCCAGCAAAGATGAGCCGCTGCTGGTCCGGGGGGATGCCT 25479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483379165383600