Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq222 264 3e-65 >seq222 Length=84561 Score = 264 bits (292), Expect = 3e-65 Identities = 416/593 (70%), Gaps = 11/593 (2%) Strand=Plus/Plus Query 97069 GAACTCAAGATTGATCTTGACCTCGTGGTACTGGAGAGCAATAAGGGGAAGGGCAAGGCC 97128 |||||| | |||||||| ||||||||||||||||| || || ||||| || || ||||| Sbjct 62902 GAACTCGATGTTGATCTTCACCTCGTGGTACTGGAGGGCGATGAGGGGCAGCGCCAGGCC 62961 Query 97129 GGGATTGCGGCAGAACCAGAACTCAAGAGGGATGTAAAGATCCATCTCGGGGACGA--AG 97186 ||| ||||||||||| ||||||| || |||||||| || || | |||| | Sbjct 62962 GGGGTTGCGGCAGAAGAAGAACTCCAGGGGGATGTACAGGACCTCGCCCTTGACGGTCAT 63021 Query 97187 GCAGTCGTAACCGAAGGGGCAGTGAGCTGGGTA-----AGGGTAGGTACGTTACCGATCA 97241 | | || ||| || | | | | |||| | || | || | || || || Sbjct 63022 GGACGCG---CCGGAGTCGTTGAGGG-TGGGGACCACCAGAGAGGGGATGTGGCCACACA 63077 Query 97242 TGTTCTGGTAACCAACCTTCTTGCCCTCAGTCTGGGTAAGCTCGTTCCAGATGTGCATCC 97301 |||| ||| || | || | ||| | |||||||| |||||| ||||||||| |||| Sbjct 63078 TGTTGGCGTAGCCCAGCTGGTGGCCGGCGGTCTGGGTGAGCTCGGACCAGATGTGGATCC 63137 Query 97302 AGTCACCGTAGTGCTTGTCGATGCGCTGGCCACCAATTTCGACCTCGGCGTACTTGATAA 97361 |||||||||||||||||||||||||||||||||| || || | |||| || ||||||| | Sbjct 63138 AGTCACCGTAGTGCTTGTCGATGCGCTGGCCACCGATCTCAAGCTCGACGGACTTGATGA 63197 Query 97362 GATTGTGGCCGAGGTAATTGAGCCAACGGAACTTCTCACCGGAAGGGACAGAGACCTGAG 97421 | |||||| | | |||| ||| ||||| | ||| || || | || | | Sbjct 63198 GGGCGTGGCCCACCCAGTTGACCCAGCGGAAGCCGGCGCCGTCGGGCACGGTCACATCGG 63257 Query 97422 GGATTGTGACCTGAAGGTATACACGCGAGAGAAGATCACCATTACGAGAAACAGTGCATG 97481 | | || | ||||| || | || || || || ||| | ||||| | Sbjct 63258 GCAGCTGCACGCGCAGGTAGGTGCGGTGAATGAGGTCGCCGTTGCGACTGATCGTGCAGG 63317 Query 97482 TCACGCGCTTGCCGAAGTCAGCAGAGCCGTTGAAGGTCTGCTCGATGGATTCCATCGAGA 97541 |||| |||| ||||||| | ||||||||||| |||||||||||| ||||| | | Sbjct 63318 TCACCTTCTTGTTGAAGTCACCCGAGCCGTTGAACACCTGCTCGATGGACTCCATGGCAA 63377 Query 97542 AGTTCGTGTGGCGTCTGTAAACAATTTTGAAGAAAGTAATCTGAGGATTGCCGGTAAGGT 97601 |||| ||||| || | || || | ||||| || || ||||| || ||||| || |||| Sbjct 63378 AGTTGGTGTGACGGCGATACACGACCTTGAAAAACGTGATCTGGGGGTTGCCAGTCAGGT 63437 Query 97602 ATATATCTTGCGCGCCATACGCGACGAGCTGCATTAAACCACCACCCATTTTT 97654 | || || || || || || |||||||| ||||||| ||| |||||||||||| Sbjct 63438 AGATGTCCTGAGCACCGTAAGCGACGAGTTGCATTAGACCGCCACCCATTTTT 63490 Score = 161 bits (178), Expect = 2e-34 Identities = 148/187 (79%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 96823 CTGGACGACCCAGACAAGCTCTTTGCAGGGATGATTGAAGTTAAGCTTGATCTTGTTAGA 96882 ||| ||||||||||| ||||| ||| ||| || |||||||| | |||||||||||| Sbjct 62620 CTGCACGACCCAGACGAGCTCCTTGGTGGGGTGGTTGAAGTTCATCTTGATCTTGTTGTT 62679 Query 96883 GACCGAGGAGACAGACTCGTCACCAGTGAACTGAACCTGCTCGATGAGGTACTCGTGCGA 96942 | | | ||| ||||| |||||||| | ||||||||||||||||||||| || Sbjct 62680 GGTGTTGCTGGTGCTCTCATCACCGGTGAACTGCAGCTGCTCGATGAGGTACTCGTGGGA 62739 Query 96943 GACCTGCGCGAAGCGGCGACGCTCATCAGTGTCAAGGAAGATGTAGTCGGCGTAGAGAGA 97002 |||||| ||||||||||| ||||| || ||||| ||| ||||||||||| | |||| || Sbjct 62740 GACCTGGGCGAAGCGGCGGCGCTCGTCGGTGTCGAGGTAGATGTAGTCGACAAAGAGCGA 62799 Query 97003 CGCGGCC 97009 ||||||| Sbjct 62800 CGCGGCC 62806 Score = 113 bits (124), Expect = 1e-19 Identities = 222/333 (67%), Gaps = 24/333 (7%) Strand=Plus/Plus Query 96257 CCCCCCATGCCGCTCATTATACGGAGGACATTGTAATTTGTGGCATAGACACGGACCTTA 96316 || |||||||||||||| || || ||||| ||||| || |||| |||| |||||||| Sbjct 62099 CCACCCATGCCGCTCATAATCCGCAGGACGTTGTAGTTGATGGCGTAGATGCGGACCTTG 62158 Query 96317 GCATCGCCGGAAGCGGTGG-----------------TGGCCGCT-------GTGAGGGTG 96352 || || || | || | ||| || | || ||||| Sbjct 62159 GCGGTGCGGGGGGTCGTCGCGCCGTTGACGGTCTTCTGGACGGTTGAGGGCGTCAGGGTC 62218 Query 96353 AGCTGAAGGGTCGCGTTATCGATACGAGACATATTACAGGTGCCAGAAGGCTGGTGCTCT 96412 | ||| ||||| || || || || || || | || |||||||| || ||||||||||| Sbjct 62219 ATCTGCAGGGTAGCATTGTCAATGCGCGAGAAGTTGCAGGTGCCCGACGGCTGGTGCTCC 62278 Query 96413 TCGGGTTTGAGGCCGAAAGAGTAGACATTGATGCCTGTGGCGGGGACGTTGGTATGGTGT 96472 ||||| |||||||| ||||| || |||||||| ||| || ||||| ||||| Sbjct 62279 TCGGGGCGCAGGCCGAAGGAGTAAACGTTGATGCCCTTGGACGGCACGTTCTCGTGGTGC 62338 Query 96473 TGATAAGGTTGTACAAGATTGAAGTAACGACCCATGCGCTCCGAGAAACGATCATGACCG 96532 || || || || || || ||| |||| || || ||| || | | || || || ||| Sbjct 62339 TGGTAGGGCTGCACGAGGTTGTAGTAGCGGCCGTCGCGGTCGGCGGTGCGGTCGTGGCCG 62398 Query 96533 TTAAGCTGGAGCTTAGCGGAGAAGACGGGATTG 96565 || ||||||| |||| | ||||||| ||| Sbjct 62399 TTGAGCTGGATGCGAGCGATGGAGACGGGGTTG 62431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186708030391290