Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq6015 630 2e-176 >seq6015 Length=1491 Score = 630 bits (698), Expect = 2e-176 Identities = 743/993 (75%), Gaps = 12/993 (1%) Strand=Plus/Minus Query 19496 TGGGAGCTTTTTACTAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTT 19555 |||| | |||| | | ||| ||||||| || | |||||| | || | || ||||| Sbjct 1359 TGGGCTCGTTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTC 1300 Query 19556 GGAACACTGATGATTCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCAT 19614 || | | ||||| || ||||| ||| | || || ||| | ||||| || || ||||| Sbjct 1299 GGTGTAATCATGATCCCTTGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCAT 1241 Query 19615 TGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTA 19674 || ||||| ||||| ||||| ||||| ||||| || || ||||| ||| |||||||| Sbjct 1240 CGCTGCTCCGCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTA 1181 Query 19675 TGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTT 19734 || ||||||||||| | || || || | || | || || || || ||||||| Sbjct 1180 CGGTAACAACATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTT 1121 Query 19735 CTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCA 19794 ||||||||||||||||||| | | ||||| || ||| | |||||||| || || | ||| Sbjct 1120 CTACCCAATTTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCA 1061 Query 19795 ACTTGTGGTCTTCCACTTCCTCATTGGCATCTA-TGCTTACATGGGACGAGAGTGGGAAC 19853 ||| | || | |||||||| | || | || |||| ||||||| || ||||||||| Sbjct 1060 ACTAATCGTTTGTCACTTCCTTTTAGGTGTATACTGCT-ACATGGGTCGTGAGTGGGAA- 1003 Query 19854 TTAGCTATC-GACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCA 19912 ||| || || | |||| ||| | || ||||| |||||| ||||| ||||| || || Sbjct 1002 TTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCT 943 Query 19913 GCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATG 19972 || || || || || | || ||||| |||| || ||| ||||| |||| |||| Sbjct 942 GCAGCTAGCGCTGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATG 883 Query 19973 CCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATT 20032 ||||| |||||| ||||| ||||||| |||| | ||||||||||| || || ||||| Sbjct 882 CCTTTAGGTATCAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATC 823 Query 20033 CTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGT 20092 || |||||||| ||||||||| | ||||| ||||||||||| ||||| ||| ||||| | Sbjct 822 CTTATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCT 763 Query 20093 GCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAGACTACTGAACAGGAAAGT 20152 || ||||||||||| | ||||| || ||| | | ||||| || |||||| | ||| | Sbjct 762 GCAATGCACGGTTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAA--T 705 Query 20153 CAG--AACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTC 20210 ||| ||| | |||||| ||||| ||||||||||| || || ||||||||||| |||| Sbjct 704 CAGCTAACGAAGGTTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTC 645 Query 20211 ATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTAC 20270 | |||||||| || ||||| ||||||||||||||||| |||||||| ||||| ||| Sbjct 644 ACGGTTACTTCGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTAC 585 Query 20271 ACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTA 20330 |||||||||| ||||| ||||| || | || ||||||||| | || || || |||| | Sbjct 584 ACTTCTTCCTAGCTGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAA 525 Query 20331 CAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGAC-AACAATGGT 20389 | ||||| || || || |||||||||||||| ||||| || || | ||| |||| ||| Sbjct 524 CTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAA-GGT 466 Query 20390 CGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATG 20449 ||||| | | |||||||| ||||| |||| |||||||| | || | || || ||| Sbjct 465 CGTGTATTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATG 406 Query 20450 CATGAACGGAATGCTCATAACTTCCCACTTGAC 20482 || || || || ||||| |||||||| || ||| Sbjct 405 CACGAGCGTAACGCTCACAACTTCCCTCTAGAC 373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148816623013620