Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq6015 580 3e-161 >seq6015 Length=1491 Score = 580 bits (642), Expect = 3e-161 Identities = 729/990 (74%), Gaps = 8/990 (1%) Strand=Plus/Minus Query 28624 TGGGAGCTTTTTACTAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTT 28683 |||| | |||| | | ||| ||||||| || | |||||| | || | || ||||| Sbjct 1359 TGGGCTCGTTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTC 1300 Query 28684 GGAACACTGATGATTCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCAT 28742 || | | ||||| || ||||| ||| | || || ||| | ||||| || || ||||| Sbjct 1299 GGTGTAATCATGATCCCTTGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCAT 1241 Query 28743 TGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTA 28802 || || || ||||| ||||| ||||| ||||| || || || |||| |||||| || Sbjct 1240 CGCTGCTCCGCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTA 1181 Query 28803 TGGAAACAACATCATATCGGGAGCCGTCGTACCGAGCAGCAATGCCATCGGACTACACTT 28862 || ||||||||||| | || || || | || | || || || || ||||||| Sbjct 1180 CGGTAACAACATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTT 1121 Query 28863 CTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCA 28922 ||||||||||||||||||| | | ||||| || ||| | |||||||| || || | ||| Sbjct 1120 CTACCCAATTTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCA 1061 Query 28923 ACTTGTGGTCTTCCACTTCCTCATTGGCGTCTA-TGCTTACATGGGACGCGAGTGGGAAC 28981 ||| | || | |||||||| | || || || |||| ||||||| || ||||||||| Sbjct 1060 ACTAATCGTTTGTCACTTCCTTTTAGGTGTATACTGCT-ACATGGGTCGTGAGTGGGAA- 1003 Query 28982 TTAGCTATC-GACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCA 29040 ||| || || | |||| ||| | || ||||| ||| || ||||||||||| || || Sbjct 1002 TTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCT 943 Query 29041 GCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATG 29100 || || || || ||| | || |||||| | || |||||||| || || | ||| Sbjct 942 GCAGCTAGCGCTGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATG 883 Query 29101 CCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATT 29160 ||||| ||||| || || ||||||| |||| | || |||||||| || || ||||| Sbjct 882 CCTTTAGGTATCAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATC 823 Query 29161 CTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGT 29220 || |||||||| ||||||||| | || |||||||| || || ||||| || |||| | Sbjct 822 CTTATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCT 763 Query 29221 GCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGCGTGAGACGACTGAAGACATCTCT 29280 |||||||||||||| | || || || ||| | | ||||| || |||||| || || Sbjct 762 GCAATGCACGGTTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCA 703 Query 29281 CAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCAC 29340 ||| | |||||| ||||| ||||||||||| || || ||||||||||| |||||| Sbjct 702 GCTAACGAAGGTTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCAC 643 Query 29341 GGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACAC 29400 |||||||| || ||||| ||||||||||| ||||| ||||| || ||||| ||||| Sbjct 642 GGTTACTTCGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 583 Query 29401 TTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACA 29460 |||||||| ||||| ||||| || | || ||||||||| | || || || |||| || Sbjct 582 TTCTTCCTAGCTGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACT 523 Query 29461 ATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACA-ACAATGGTCG 29519 ||||| || || || |||||||| ||||| ||||| || || | ||| |||| ||||| Sbjct 522 ATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAA-GGTCG 464 Query 29520 TGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCA 29579 ||| | || |||||||| || | |||| || |||||| | || | ||||||||||| Sbjct 463 TGTATTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCA 404 Query 29580 TGAGCGTAATGCTCATAACTTCCCACTTGA 29609 |||||||| ||||| |||||||| || || Sbjct 403 CGAGCGTAACGCTCACAACTTCCCTCTAGA 374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146653600003940