Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq6015 587 2e-163 >seq6015 Length=1491 Score = 587 bits (650), Expect = 2e-163 Identities = 730/989 (74%), Gaps = 8/989 (1%) Strand=Plus/Minus Query 18723 TTTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACT 18782 ||||||||| ||| | || || || |||||| | || ||||| ||||| || | | Sbjct 1351 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAAT 1292 Query 18783 GATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 ||||| || ||||| ||| | || || || || ||||| || || ||||| ||||| | Sbjct 1291 CATGATCCCTTGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTC 1233 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 | || |||||||| ||||| ||||| ||||| || | || ||||||||| || |||| Sbjct 1232 CGCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACA 1173 Query 18902 ACATCATATCGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAA 18961 ||||||| | || || || | || | || || || || ||||||||||||||| Sbjct 1172 ACATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAA 1113 Query 18962 TTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGG 19021 ||||||||||| | | ||||| || ||| | |||||||| || || | |||||| | | Sbjct 1112 TTTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCG 1053 Query 19022 TCTTCCACTTCCTCATTGGCGTCTA-TGCTTACATGGGACGCGAGTGGGAACTTAGCTAT 19080 | | |||||||| | || || || |||| ||||||| || ||||||||| ||| || | Sbjct 1052 TTTGTCACTTCCTTTTAGGTGTATACTGCT-ACATGGGTCGTGAGTGGGAA-TTATCTTT 995 Query 19081 C-GACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTC 19139 | | |||| ||||| || ||||| |||||| ||||||||||| || || ||||| Sbjct 994 CCGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAG 935 Query 19140 TGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGG 19199 || || ||| | || || ||| |||| |||||||| || || | ||||||||| || Sbjct 934 CGCTGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGG 875 Query 19200 TATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCA 19259 ||| || ||||| ||||||| |||| | |||||||| ||||| || |||||||| ||||| Sbjct 874 TATCAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCA 815 Query 19260 CCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCA 19319 ||| ||||||||| | ||||| |||||||| || || || ||| |||| ||| ||||| Sbjct 814 CCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCA 755 Query 19320 CGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAGGTATCTCAGAACTA 19379 |||||| | ||||| || ||| | | |||||||| |||||| | | ||| ||| | Sbjct 754 CGGTTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGA 695 Query 19380 TGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTT 19439 || ||| ||||| ||||||||||| || || ||||| || || ||||| || || || Sbjct 694 AGGTTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTT 635 Query 19440 TGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTT 19499 ||||| | || ||||| ||||| || |||||||| ||||| |||| ||||| | Sbjct 634 CGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCT 575 Query 19500 GGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATT 19559 ||||||||||| || | || |||||||| | || | || | || ||||| || Sbjct 574 AGCTGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTT 515 Query 19560 CAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACA-ACAATGGTCGTGTCATTG 19618 |||| | || || || ||||| ||||| || || | ||| |||| |||||||| | Sbjct 514 CAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAA-GGTCGTGTATTAA 456 Query 19619 ATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTA 19678 | |||||||| ||||| |||| ||||||||| | || | || ||||||||||| |||| Sbjct 455 ACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTA 396 Query 19679 ATGCTCATAACTTCCCACTTGATTTGGCT 19707 | ||||| |||||||| || || || ||| Sbjct 395 ACGCTCACAACTTCCCTCTAGACTTAGCT 367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141137251381620