Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq222 260 1e-64 seq32 84.2 2e-11 >seq222 Length=84561 Score = 260 bits (288), Expect = 1e-64 Identities = 590/877 (67%), Gaps = 34/877 (4%) Strand=Plus/Plus Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCG 147519 || || |||||||| |||||||| |||||||| |||| | | |||||| | ||| || Sbjct 74381 GCAATGGACGCCAGGTTGCAGACCGCCGTCTCGTCGGGGCTGGTGTACTCGAGGATCTCC 74440 Query 147520 GCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCAC 147579 | ||| ||||||||||| || ||| |||| || |||||| ||||| || || ||||| Sbjct 74441 GTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATGTTGCTGGTTGCTCTTGCGGTTGCAG 74500 Query 147580 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAAC 147636 | || ||| | ||||||||||| || ||||||| |||| || | ||| |||| Sbjct 74501 GAATCCTTGTATAGCATGTACGGGGTACCCGTCTCGATCTGCGCATCCAGGATGGCAAAC 74560 Query 147637 CTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCG 147696 | ||| | ||| || || | | || || || |||||| ||||| ||| | Sbjct 74561 C---ACAGCTGCTGGGCGCGGATCGTCTTGCGCGCACGCCCCTCGCGCTCGTAGCGCGTG 74617 Query 147697 TACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACAC 147756 || | |||||||||||||||||| |||| || || || || || || | || || Sbjct 74618 TAGAGCCGCTCAAACTCGTCGCCCCAGCAGTCCGCTAGTCCAGGCGCCTCGTTGGGGCAA 74677 Query 147757 ATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACA-- 147814 | ||||||||| | ||||| | || || |||| || || || ||||||| Sbjct 74678 AAGAGCGACCACTCCGCATCCGCCTCGACCCGCTGCATGAAGAGGTCGTTGACCCACATG 74737 Query 147815 GCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATG----TTGCGTTTCAAA 147870 || | | | ||| || ||||| | ||||| ||| || ||||| || Sbjct 74738 GCAAGGA-ACAAG-TCCCGCGCGCGCGACTCCTC-TTTCCCGTGGTTCTTGCG---CAGC 74791 Query 147871 TTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTA 147930 | | | | | | ||||| ||||||||||| || | ||| | ||| | ||| || || Sbjct 74792 TCGATGAAGTCAAAAATGTCAGCGTGCCAGGGCTCCAGGTAAATGGCAAACGCCCCCTTG 74851 Query 147931 CGCTTTCCG---CCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGT 147987 ||||||||| |||||||| || | ||| || ||| |||||| ||||||| ||||||| Sbjct 74852 CGCTTTCCGCCCCCCTGGTCCACGTAACGCGCCGTGTCGTTAAAGACGCGCAGCATGGGT 74911 Query 147988 TCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCG 148047 | | |||| | | |||||||||||| ||| | | |||| ||| || | ||| Sbjct 74912 ACGATGCCGTTGGACGTGCCGTTGGTGCCGCGGATATAGGAGCCGGTGGCACGGATGTCG 74971 Query 148048 TGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTC 148107 || | | | ||| ||||| || ||| ||| || ||| | ||||| || | || Sbjct 74972 TGAATGGACAGGCCGATGCCACCCGCGTTCTTGGAAATGACCGCGCACTCTTTGAGCGTG 75031 Query 148108 GTGTAGATGCCGTCGATGCTG---------TCGTTTTTGACGCCAAGCAAAAAACACGAA 148158 || ||||| ||||||||| ||| || | | | || || ||||| Sbjct 75032 TCATAAATGCCCTCGATGCTGTCGCAGCCATCGCCCTTCATGTGCACCAGGAAGCACGAG 75091 Query 148159 CACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGT-AAAC-A 148216 | ||| || || | |||| || | ||| || ||||| ||||||||| |||| Sbjct 75092 CTCATCTGAGGGCGCGGCGTGCCAGAGTTGAAGAGCGTGGGCGACGCGTGCGTGAAACGG 75151 Query 148217 ATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGC 148276 | || ||||| | |||||||||| || ||| || | ||||| |||| |||| Sbjct 75152 CGCTCCGA--CATCAGGTGATACGTCTCGATGGCGCTCTCCAGGTCGTGCGCGTGGATGC 75209 Query 148277 CCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 |||||||||||||||||||||||||||| || || || Sbjct 75210 CCAGCGCGACGCGCATGAGCATGTGCTGCGGGCGCTC 75246 >seq32 Length=161680 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/240 (68%), Gaps = 3/240 (1%) Strand=Plus/Minus Query 46759 TGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCA 46818 ||||||| || | |||||||| ||||| |||||||||||||| | | | | Sbjct 59627 TGCCATGTGTGACCCAAAAGGCCACATGGGCGTTGAAGTGGATCGAG---GCGTCGGATG 59571 Query 46819 CGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTT 46878 | | ||| |||| |||||||||| || ||||| ||| | ||||| |||||| | Sbjct 59570 TGTTCGCCAGGCGCTTGGTGGCATTTGCAGCGGTCGAGGGCATCTTTTTCTCGGGCTCAT 59511 Query 46879 TTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACG 46938 | |||||| || | | |||| || | |||||||| || || || || | Sbjct 59510 TCTGCGCCATCTTCTGGCTCAAAAAACGCGGGCTCATGCCGGGGCTCACCTTTTCAAATG 59451 Query 46939 AGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACGC 46998 || | ||||| || ||||| || |||||| ||||||||||| || ||||||| || Sbjct 59450 AGCTCATCTCTCGGGACGAGGGTCTACACTGCGACTTTGCGTGCTTCCTCTACAAGATGC 59391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476570151860400