Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq367 89.7 5e-13 seq589 87.8 2e-12 seq4034 82.4 7e-11 >seq367 Length=69066 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || ||||| || | || |||||||| ||||||||||| || ||| Sbjct 68806 CCACCGCGCAGGCGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGCC 68865 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| ||||||||||| || || || |||| ||||||||||||| ||| Sbjct 68866 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGA 68925 Query 35630 ACGC 35633 | || Sbjct 68926 ATGC 68929 >seq589 Length=52745 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || ||||| |||| ||| |||||||| || |||||||| ||||| | || ||| |||| Sbjct 25590 CAGCACCAGGTGTAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCGTC 25531 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCG 35624 || || ||||| || ||||| || | |||||||||||||| Sbjct 25530 CTCGAGTTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCCG 25490 >seq4034 Length=4767 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || ||||| || | ||| |||||||| || |||||||| || || | || ||| | || Sbjct 1995 CAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGCTAGCGTGCGCCCATC 1936 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGC 35633 || |||||||| || ||||| || | |||||||||||||| |||| || Sbjct 1935 CTCGAGCTGCTTCCCGGCAAAGATTAGCCGCTGCTGGTCCGGGGGAATGC 1886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450754775401200