Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq222 147 2e-30 seq589 86.0 6e-12 seq4034 84.2 2e-11 >seq222 Length=84561 Score = 147 bits (162), Expect = 2e-30 Identities = 295/434 (68%), Gaps = 14/434 (3%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || |||||||| ||||||| ||| ||||||| |||| | ||| | || |||| | Sbjct 75237 CAGCACATGCTCATGCGCGTCGCGCTGGGCATCCACGCGCACGACCTGGAGAGCGCCATC 75178 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || ||||| || ||||||| | | || |||||||| |||||||| | || | Sbjct 75177 GAGACGTATCACCTGATGTCGGAGCGCCGTTTCACGCACGCGTCGCCCACGCTCTTCAAC 75118 Query 7684 GCGGGCACAAACGCGCC-TCAATTGTCCTCGTGTTTTTTGCTAACCATGC---GCGAAG- 7738 | ||||| |||||| ||| || |||||| || || | |||| |||| | Sbjct 75117 TCTGGCACGC-CGCGCCCTCAGATGAGCTCGTGCTTCCTGGTGCACATGAAGGGCGATGG 75059 Query 7739 -----ACAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATA 7793 |||||||||| |||||||| ||||||| || ||||| |||||||| | Sbjct 75058 CTGCGACAGCATCGAGGGCATTTATGACACGCTCAAAGAGTGCGCGGTCATTTCCAAGAA 74999 Query 7794 CGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTC 7853 || || || || || ||| | | ||||| | || |||| ||| | ||| Sbjct 74998 CGCGGGTGGCATCGGCCTGTCCATTCACGACATCCGTGCCACCGGCTCCTATATCCGCGG 74939 Query 7854 CACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCG 7913 ||||||||| | ||| ||| | | |||||| ||||||| || || || ||| ||| Sbjct 74938 CACCAACGGCACGTCCAACGGCATCGTACCCATGCTGCGCGTCTTTAACGACACGGCGCG 74879 Query 7914 ACATGTAGACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTG 7970 | || ||||||||||| ||||||||| || || |||||| || ||||||| || Sbjct 74878 TTACGTGGACCAGGGGGGCGGAAAGCGCAAGGGGGCGTTTGCCATTTACCTGGAGCCCTG 74819 Query 7971 GCACGCGGACATTT 7984 |||||| ||||||| Sbjct 74818 GCACGCTGACATTT 74805 >seq589 Length=52745 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| |||||||||||| ||||| || |||||||||||| | | ||| | Sbjct 25595 AGGCGCAGCACCAGGTGTAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGC 25536 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||| ||||| || ||||| ||||| || | |||||||| || || || |||||| Sbjct 25535 CCGTCCTCGAGTTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCCGGGGGGATGCCT 25479 >seq4034 Length=4767 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 134610 CCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCG 134669 |||||||| ||||||||||| ||||| || | |||||| ||||||||||| || Sbjct 1752 CCTTCTTTGTCTTGAATTTTCGCCTTGACGTTCTCTATTGTGTCTGACGATTCCACTTCA 1693 Query 134670 AGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || ||||| | || |||||||| |||||||| Sbjct 1692 AGAGTGATCGTCTTCCCGGTAAGGGTCTTAACGAATATTTGCAT 1649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505354872562800