Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq6015 810 0.0 seq3788 307 1e-78 >seq6015 Length=1491 Score = 810 bits (898), Expect = 0.0 Identities = 768/978 (79%), Gaps = 2/978 (0%) Strand=Plus/Minus Query 157676 TTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACTG 157735 || || |||||| | || ||||| | |||||||| || | ||||||||||||||| | Sbjct 1350 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 1291 Query 157736 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 157794 ||||| ||| | ||| ||||||| ||| || |||||| |||| ||| |||||||||| Sbjct 1290 ATGATCCCTTGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCC 1232 Query 157795 CCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAA 157854 || || ||||| || || ||||| || ||||| ||||||| || | || |||||||| Sbjct 1231 GCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACAA 1172 Query 157855 CATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCAT 157914 ||||||| | ||||| || | || | ||| ||||| || ||| | ||||||||||| || Sbjct 1171 CATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAAT 1112 Query 157915 CTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAGT 157974 |||||||| || |||||||||||||| | || ||||||||||||| |||||| | || Sbjct 1111 TTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCGT 1052 Query 157975 ATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACCG 158034 | |||||||| | || | || ||| ||||| |||||||||||| | |||| ||| Sbjct 1051 TTGTCACTTCCTTTTAGGTGTATACTGCTACATGGGTCGTGAGTGGGAATTATCTTTCCG 992 Query 158035 TTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGC 158094 |||||||||||| ||||||||| ||| || || || |||||||| |||||||| || || Sbjct 991 TTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGCGC 932 Query 158095 AGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158154 |||||| |||| || || | || |||||||| ||||| |||| ||||||| | ||||| Sbjct 931 TGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGTAT 872 Query 158155 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158214 | |||||||| |||| |||| | ||||||||||| || |||||||||||||||||||| Sbjct 871 CAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 812 Query 158215 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158274 ||||| ||| | ||||||||||| ||||| ||||| || | |||||||| ||||| || Sbjct 811 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGG 752 Query 158275 AAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTACGG 158334 | |||||||| || | | |||||||| ||||||| || ||| ||| | || Sbjct 751 TTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAGG 692 Query 158335 TTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTCGG 158394 ||| || |||||||||||||| || ||||||||||| ||||| || || |||||||| Sbjct 691 TTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTCGG 632 Query 158395 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 158454 |||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||| || Sbjct 631 TCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTAGC 572 Query 158455 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAA 158514 ||| ||||| ||| |||| || |||||||| || | || | ||||| ||||| ||||| Sbjct 571 TGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTCAA 512 Query 158515 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 158574 ||| |||||||||||||||||||| || | | || || |||||||| || ||||| Sbjct 511 CCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAACAC 452 Query 158575 CTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGC 158634 |||||||| | | ||||| ||| | ||||||||||| ||||| ||||||||||| Sbjct 451 TTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGC 392 Query 158635 ACACAACTTCCCACTGGA 158652 ||||||||||| || || Sbjct 391 TCACAACTTCCCTCTAGA 374 >seq3788 Length=5474 Score = 307 bits (340), Expect = 1e-78 Identities = 374/508 (74%), Gaps = 4/508 (1%) Strand=Plus/Minus Query 159892 CAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTA 159951 || |||||||| |||||||| || ||||| ||||| |||||||| || |||||| | || Sbjct 2740 CAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCTGGTGTTTTA 2681 Query 159952 GGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTGTAGAGAACACATTGTTTGAAGAT 160011 ||||| || | || ||||| || || |||||||||||||| |||||||| || |||||| Sbjct 2680 GGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTCGAAGAT 2621 Query 160012 GGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCT 160071 || || || ||||| || || || | ||||| || | ||||| ||||| || Sbjct 2620 GGTGACGGTGCTAACACGTTCCGTGCCTTCAACCCTACACAGGCTGAAGAAACTTACTCA 2561 Query 160072 ATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGG 160131 ||||| || |||||||| |||||||| || || || ||||| || || ||||||||||| Sbjct 2560 ATGGTAACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTCTCTAACAAGCGT 2501 Query 160132 TGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACA--TCCTCTATTG 160189 ||| | || || |||||| | || || || || | ||| || |||| | ||||| | Sbjct 2500 TGGTTACACTTCTTCATGCTTTTAGTTCCCGTGACGGGGCTTTGGATGAGTGCTCTA--G 2443 Query 160190 GCATTATTGGTCTTGCTTTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAG 160249 | || ||||| | ||| | |||||||||||||| || ||||| || || || | | Sbjct 2442 GTGTTGTTGGTTTAGCTCTTAACCTTCGTGCTTATGACTTCGTATCACAAGAAATCCGTG 2383 Query 160250 CAGCAGAAGATCCTGAATTTGAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGAC 160309 | || ||||| ||||| || || || ||||| || || |||||||| | || ||||| Sbjct 2382 CTGCTGAAGACCCTGAGTTCGAAACTTTCTATACTAAAAACATCCTTCTTAACGAAGGTA 2323 Query 160310 TTCGTGCTTGGATGGCACCTGCTGATCAACCACATGAAAACTTTATCTTCCCTGAGGAAG 160369 | |||||||||||||| | || ||||| || ||| | | |||||||| |||| Sbjct 2322 TCCGTGCTTGGATGGCTGCGCAAGACCAACCTCACGAACGTCTAGTATTCCCTGAAGAAG 2263 Query 160370 TACTACCTAGAGGTAACGCACTGTGATT 160397 || |||| | |||||||| || | ||| Sbjct 2262 TATTACCGCGTGGTAACGCTCTATAATT 2235 Score = 266 bits (294), Expect = 4e-66 Identities = 357/497 (72%), Gaps = 0/497 (0%) Strand=Plus/Minus Query 159376 TGGTTTGATGTCCTGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCT 159435 |||||||||| | ||||||||||| | ||| || || || ||||| |||||||| Sbjct 4502 TGGTTTGATGACGCTGATGACTGGCTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTCA 4443 Query 159436 GGACTCCTACTTCTTCCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACT 159495 || | ||||| | || |||||| | || | || |||||| | ||||| || ||| Sbjct 4442 GGTTTATTACTTTTCCCTTGTGCTTACTTTGCACTAGGTGGTTGGTTAACTGGTACAACT 4383 Query 159496 TTTATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGGTGCTAATTTT 159555 || | || ||||| || || ||| | |||| ||| ||| | |||||| ||| || Sbjct 4382 TTCGTAACATCATGGTATACACATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 4323 Query 159556 CTCACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGG 159615 | || |||||||| ||||| ||||| | ||||| || |||||||| | ||||| Sbjct 4322 TTAACTGCAGCTGTATCAACACCTGCAAACAGTATGGCACACTCTCTTCTATTTGTTTGG 4263 Query 159616 GGTCCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTT 159675 ||||| || ||||||| |||||| ||| ||||| |||||||| || | ||| | || Sbjct 4262 GGTCCAGAAGCTCAAGGTGACTTCACACGTTGGTGTCAACTTGGTGGTTTATGGGCATTC 4203 Query 159676 GTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCT 159735 || ||| | |||||||| || | | || || |||||| || | || |||||||||||| Sbjct 4202 GTAGCTTTACACGGTGCTTTTTCATTAATTGGCTTTATGTTAAGACAGTTTGAAATTGCT 4143 Query 159736 CGTCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTT 159795 ||| ||| | ||||| || || |||||||| ||||| | || ||| |||| ||| Sbjct 4142 CGTTCAGTAAACTTACGTCCATATAACGCTATTGCTTTCTCAGCGCCAATTTCTGTATTT 4083 Query 159796 GTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTC 159855 || || ||||| || || ||| | ||||| || ||||||||||| ||||| || Sbjct 4082 GTTGCTGTTTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGCTTT 4023 Query 159856 GGGGTAGCAGCAATCTT 159872 || ||||| |||||||| Sbjct 4022 GGTGTAGCTGCAATCTT 4006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572974648308000