Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq6015 780 0.0 seq3788 302 5e-77 >seq6015 Length=1491 Score = 780 bits (864), Expect = 0.0 Identities = 770/990 (78%), Gaps = 4/990 (0%) Strand=Plus/Minus Query 159959 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 160018 ||| || |||||| | ||||| || | ||||| | || ||||||||||||| ||| | Sbjct 1351 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAAT 1292 Query 160019 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 160077 ||||| || ||| | | ||||| ||| || |||||| |||| ||| ||||||||| Sbjct 1291 CATGATCCCTTGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTC 1233 Query 160078 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 160137 | || || |||||||| || |||||||| || || ||||||| || | || ||||||| Sbjct 1232 CGCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACA 1173 Query 160138 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 160197 |||||||| | ||||| || | ||| |||| ||||| |||||| | |||||||| || | Sbjct 1172 ACATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAA 1113 Query 160198 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 160257 | |||||||| || | ||||| |||||| | || ||||||||||||| |||||| | | Sbjct 1112 TTTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCG 1053 Query 160258 TATTTCACTTCCTTATCGGCATCTA-TGCATATATGGGACGTGAGTGGGAACTTTCATAC 160316 | | |||||||||| | || | || ||| || ||||| |||||||||||| | || | | Sbjct 1052 TTTGTCACTTCCTTTTAGGTGTATACTGC-TACATGGGTCGTGAGTGGGAATTATCTTTC 994 Query 160317 CGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCT 160376 |||||||||||||| || |||||| ||| || || || |||||||| |||||||| Sbjct 993 CGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGC 934 Query 160377 GCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGT 160436 ||||||||| | || || || | || |||||||| ||||| |||| ||||||| | ||| Sbjct 933 GCTGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGT 874 Query 160437 ATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCAT 160496 ||| |||||||| |||| |||| | ||||||||||| || ||||| ||||||||||| Sbjct 873 ATCAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCAC 814 Query 160497 CCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCAC 160556 || ||||||||| | || |||||||| ||||| ||||| || || |||||||| |||||| Sbjct 813 CCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCAC 754 Query 160557 GGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTAC 160616 || | |||||||| || | | |||||||| ||||||| || ||| ||| | Sbjct 753 GGTTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 694 Query 160617 GGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTC 160676 ||||| || |||||||| ||||| || ||||||||||| ||||| || ||||||||| Sbjct 693 GGTTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTC 634 Query 160677 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTG 160736 |||||||| ||||||||||| || |||||||||||||| |||||| | ||||||||||| Sbjct 633 GGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTA 574 Query 160737 GCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTC 160796 || || ||||| || |||| || |||||||| ||| | ||| || || ||||| ||| Sbjct 573 GCTGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTC 514 Query 160797 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAAC 160856 ||||| |||||||||||||||||||| || | | || |||||||||||| | ||| Sbjct 513 AACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAAC 454 Query 160857 ACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 160916 || ||||||||| | | || |||||| | ||||||||||| ||||| ||||||||| Sbjct 453 ACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAAC 394 Query 160917 GCACACAACTTCCCACTCGACCTCGCTGCT 160946 || ||||||||||| || ||| | ||| || Sbjct 393 GCTCACAACTTCCCTCTAGACTTAGCTTCT 364 >seq3788 Length=5474 Score = 302 bits (334), Expect = 5e-77 Identities = 378/514 (74%), Gaps = 6/514 (1%) Strand=Plus/Minus Query 162195 TTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGT 162254 ||| | ||||| |||||||||||||| |||||||| ||||| |||||||| || |||||| Sbjct 2746 TTTTTCCAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCTGGT 2687 Query 162255 ATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTATAC 162314 | ||||||| || | ||| |||||||||||| | || || ||||| ||||||| | Sbjct 2686 GTTTTAGGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTC 2627 Query 162315 GAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGGAAGAGACT 162374 || ||||| || || ||||| || || || | | ||||||| ||||| ||| Sbjct 2626 GAAGATGGTGACGGTGCTAACACGTTCCGTGCCTTCAACCCTACACAGGCTGAAGAAACT 2567 Query 162375 TATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAAC 162434 || || ||||| || |||||||| |||||||| || || || ||| | || || |||||| Sbjct 2566 TACTCAATGGTAACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTCTCTAAC 2507 Query 162435 AAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACA--TCCT 162492 ||||| ||| | || || |||||| | || || || || | ||| || |||| | || Sbjct 2506 AAGCGTTGGTTACACTTCTTCATGCTTTTAGTTCCCGTGACGGGGCTTTGGATGAGTGCT 2447 Query 162493 CTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGA 162552 ||| || || ||||| | ||||| |||||||||||||| || ||||| || || | Sbjct 2446 CTA--GGTGTTGTTGGTTTAGCTCTTAACCTTCGTGCTTATGACTTCGTATCACAAGAAA 2389 Query 162553 TCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGCTCAATG 162612 || | || || ||||| |||||||| ||||| ||||| ||||| ||||| || || || | Sbjct 2388 TCCGTGCTGCTGAAGACCCTGAGTTCGAAACTTTCTATACTAAAAACATCCTTCTTAACG 2329 Query 162613 AAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTA-TCTTCCCA 162671 |||| | ||||| ||| | || | |||||||| || || | | || | ||||| Sbjct 2328 AAGGTATCCGTGCTTGGATGGCTGCGCAAGACCAACCTCACGA-ACGTCTAGTATTCCCT 2270 Query 162672 GAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 162705 |||||||| | || | || ||||| || |||| Sbjct 2269 GAAGAAGTATTACCGCGTGGTAACGCTCTATAAT 2236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559455812718000