Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq6015 756 0.0 seq3788 284 1e-71 >seq6015 Length=1491 Score = 756 bits (838), Expect = 0.0 Identities = 759/980 (77%), Gaps = 4/980 (0%) Strand=Plus/Minus Query 180980 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 181039 ||| || |||||| | ||||| || | ||||| | || ||||||||||||| ||| | Sbjct 1351 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAAT 1292 Query 181040 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 181098 ||||| || ||| | | ||||| ||| || |||||| |||| ||| ||||||||| Sbjct 1291 CATGATCCCTTGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTC 1233 Query 181099 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 181158 | || || |||||||| || |||||||| || || ||||||| || | || ||||||| Sbjct 1232 CGCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACA 1173 Query 181159 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 181218 |||||||| | ||||| || | ||| |||| ||||| |||||| | |||||||| || | Sbjct 1172 ACATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAA 1113 Query 181219 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 181278 | |||||||| || | ||||| |||||| | || ||||||||||||| |||||| | | Sbjct 1112 TTTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCG 1053 Query 181279 TCTTTCACTTCCTTATCGGCATTTA-TGCATACATGGGACGTGAATGGGAACTCTCTTAC 181337 | | |||||||||| | || | || ||| |||||||| ||||| |||||| | |||| | Sbjct 1052 TTTGTCACTTCCTTTTAGGTGTATACTGC-TACATGGGTCGTGAGTGGGAATTATCTTTC 994 Query 181338 CGCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCT 181397 || ||||||||||| || |||||| |||||| ||||| |||||||| || ||||| Sbjct 993 CGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGC 934 Query 181398 GCTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGC 181457 ||||||||| |||| || || | || |||||||| ||||| || | ||||| | || Sbjct 933 GCTGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGT 874 Query 181458 ATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCAT 181517 ||| ||||| ||||||| |||| | || |||||||| ||||||||||| || ||||| Sbjct 873 ATCAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCAC 814 Query 181518 CCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCAC 181577 || ||||||||||| ||||| || |||||||||||||||||| | ||| |||||||||| Sbjct 813 CCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCAC 754 Query 181578 GGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTAT 181637 ||||| || ||||| || || | ||||||| || ||||||| || ||| ||| | Sbjct 753 GGTTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 694 Query 181638 GGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTT 181697 |||||| || || ||||||||||| |||||||||||||| || || ||||||||||| Sbjct 693 GGTTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTC 634 Query 181698 GGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTC 181757 ||||| || ||||||||||| ||||||||||||||||| |||||| | ||||||||||| Sbjct 633 GGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTA 574 Query 181758 GCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTT 181817 || || ||||| || | || || |||||||| || | || | || ||||| || Sbjct 573 GCTGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTC 514 Query 181818 AACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAAC 181877 ||||| || || |||||||||||||| || | | ||| |||||| ||||| | ||| Sbjct 513 AACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAAC 454 Query 181878 ACCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAAC 181937 || ||||||||| | |||||||||| | || |||||||| ||||||||||| ||| Sbjct 453 ACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAAC 394 Query 181938 GCGCACAACTTCCCGCTTGA 181957 || ||||||||||| || || Sbjct 393 GCTCACAACTTCCCTCTAGA 374 >seq3788 Length=5474 Score = 284 bits (314), Expect = 1e-71 Identities = 363/500 (73%), Gaps = 0/500 (0%) Strand=Plus/Minus Query 182874 CAGGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTG 182933 || |||||||| ||||||||||| ||||| ||||| |||||||| || |||||| | | Sbjct 2740 CAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCTGGTGTTTTA 2681 Query 182934 GGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGAATACCTTGTATGAAGAT 182993 ||||| || | | ||||||| || |||| || ||||| || || || | |||||| Sbjct 2680 GGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTCGAAGAT 2621 Query 182994 GGAGAACAGGCAAACACATTTAAAGCGTTCGATTCCACTCAGGAGGAGGAGACCTATTCG 183053 || || || ||||| || || ||| | | || |||| || || || || || Sbjct 2620 GGTGACGGTGCTAACACGTTCCGTGCCTTCAACCCTACACAGGCTGAAGAAACTTACTCA 2561 Query 183054 ATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGT 183113 ||||| ||||| || ||||| ||||||||||| || || || || || || |||||| Sbjct 2560 ATGGTAACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTCTCTAACAAGCGT 2501 Query 183114 TGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGG 183173 ||||| |||||||| ||| | || ||||| || | ||| |||||| | | || | || Sbjct 2500 TGGTTACACTTCTTCATGCTTTTAGTTCCCGTGACGGGGCTTTGGATGAGTGCTCTAGGT 2441 Query 183174 ATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCA 183233 | |||| | |||||||| |||||||||||||| || || ||||| || | || Sbjct 2440 GTTGTTGGTTTAGCTCTTAACCTTCGTGCTTATGACTTCGTATCACAAGAAATCCGTGCT 2381 Query 183234 GCAGAAGATCCTGAGTTCGAGACGTTCTACACAAAGAACATCCTTCTCAATGAAGGACTA 183293 || ||||| ||||||||||| || ||||| || || ||||||||||| || ||||| | Sbjct 2380 GCTGAAGACCCTGAGTTCGAAACTTTCTATACTAAAAACATCCTTCTTAACGAAGGTATC 2321 Query 183294 CGTGCTTGGTTGGCACCTGCCGATCAACCACATGAAAACTTCATCTTCCCTGAAGAAGTT 183353 ||||||||| |||| | || ||||| || ||| | | |||||||||||||| Sbjct 2320 CGTGCTTGGATGGCTGCGCAAGACCAACCTCACGAACGTCTAGTATTCCCTGAAGAAGTA 2261 Query 183354 CTACCTAGAGGTAACGCACT 183373 |||| | |||||||| || Sbjct 2260 TTACCGCGTGGTAACGCTCT 2241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614564666059200