Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq6015 792 0.0 seq3788 300 2e-76 >seq6015 Length=1491 Score = 792 bits (878), Expect = 0.0 Identities = 773/993 (78%), Gaps = 2/993 (0%) Strand=Plus/Minus Query 174459 TGGGATCAGTTTTGTTCCTGGGTCACATCAACCAACAATCGTCTTTACGTCGGTTGGTTC 174518 |||| || |||||| ||| |||| ||||| | || ||| | ||| ||||||||||| Sbjct 1359 TGGGCTCGTTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTC 1300 Query 174519 GGTGTTCTAATGATTCCTACA-TTGTTAGCCGCAACTGTATGTTTCATTATCGCTTTCGT 174577 ||||| | ||||| ||| || ||| | ||||| | ||||| ||||||||| | Sbjct 1299 GGTGTAATCATGATCCCTTGTCTTCTTA-CTGCAACATCAGTATTCATCATCGCTTTCAT 1241 Query 174578 GGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTA 174637 | |||||| ||||| |||||||| || |||||||| |||||| ||||||| || | || Sbjct 1240 CGCTGCTCCGCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTA 1181 Query 174638 TGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACTT 174697 || |||||||||||| | ||||| || | || | ||| ||||| || ||| ||||||| Sbjct 1180 CGGTAACAACATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTT 1121 Query 174698 CTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTCCA 174757 ||||||||| |||||||| || || || ||||| ||| | |||||||||||||||| ||| Sbjct 1120 CTACCCAATTTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCA 1061 Query 174758 ACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATGGGACGTGAGTGGGAACT 174817 |||| | || | ||||||||| | ||| | ||| ||| ||||| |||||||||||| | Sbjct 1060 ACTAATCGTTTGTCACTTCCTTTTAGGTGTATACTGCTACATGGGTCGTGAGTGGGAATT 1001 Query 174818 CTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAGC 174877 |||| |||||||||||| | || |||||| ||| || ||||| || ||||| || || Sbjct 1000 ATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGC 941 Query 174878 AGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATGCC 174937 |||| || |||||| |||| || || | || ||||||||||||||||| | ||||| Sbjct 940 AGCTAGCGCTGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCC 881 Query 174938 CTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAACATCTT 174997 || |||||| || || ||||||| |||| | || |||||||| || || |||||| | Sbjct 880 TTTAGGTATCAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCT 821 Query 174998 GATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCAGC 175057 |||||||| ||||||||||| || || || ||||| || ||||||||||| ||||| || Sbjct 820 TATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGC 761 Query 175058 GATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAGTCACA 175117 ||||| |||||| | ||||| || || | ||||||| |||||||||| || ||| Sbjct 760 AATGCACGGTTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGC 701 Query 175118 GAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATGG 175177 ||| | |||||| || || ||||||||||| || || |||||||| ||||| || || Sbjct 700 TAACGAAGGTTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGG 641 Query 175178 CTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCACTT 175237 |||||||||||||| ||||||||||||||||||||||||||||| || ||| | ||||| Sbjct 640 TTACTTCGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTT 581 Query 175238 CTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAAT 175297 |||| |||| || ||||||||| | ||||| |||||||| || | ||| |||| || || Sbjct 580 CTTCCTAGCTGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTAT 521 Query 175298 GGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAGT 175357 ||| |||||||| || ||||||||||||||||| || ||| | ||| ||||||| | || Sbjct 520 GGCTTTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGT 461 Query 175358 ATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCATGA 175417 ||| ||||| ||||| || | | ||| | ||| | || |||||||||||||| || Sbjct 460 ATTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGA 401 Query 175418 GAGAAATGCACACAACTTCCCACTAGATTTGGC 175450 | | || || ||||||||||| ||||| || || Sbjct 400 GCGTAACGCTCACAACTTCCCTCTAGACTTAGC 368 >seq3788 Length=5474 Score = 300 bits (332), Expect = 2e-76 Identities = 373/506 (74%), Gaps = 6/506 (1%) Strand=Plus/Minus Query 176358 TTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGT 176417 ||| | || |||||||| ||||||||||||||||| ||||| |||||||| || |||||| Sbjct 2746 TTTTTCCAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCTGGT 2687 Query 176418 ATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTATAT 176477 | ||||||| || || ||| ||| || || || | |||||| ||||| || ||| Sbjct 2686 GTTTTAGGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTC 2627 Query 176478 GAAGATGGAGAACAGAAC-AACACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAGAC 176536 |||||||| | || | | ||||| ||| ||| ||| | | || |||| ||||| || Sbjct 2626 GAAGATGGTG-ACGGTGCTAACACGTTCCGTGCCTTCAACCCTACACAGGCTGAAGAAAC 2568 Query 176537 CTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAA 176596 || || ||||| || || ||||| |||||||| ||||| || || || || || ||| Sbjct 2567 TTACTCAATGGTAACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTCTCTAA 2508 Query 176597 TAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAG 176656 ||||||||| | |||||||| ||| | || || || || | ||| |||||| | Sbjct 2507 CAAGCGTTGGTTACACTTCTTCATGCTTTTAGTTCCCGTGACGGGGCTTTGGATGAGTGC 2448 Query 176657 TATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGAT 176716 | | || | |||| | |||||||| |||||||||||||| || || ||||| || Sbjct 2447 TCTAGGTGTTGTTGGTTTAGCTCTTAACCTTCGTGCTTATGACTTCGTATCACAAGAAAT 2388 Query 176717 TAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGA 176776 | || || ||||| |||||||| ||||||||||| || || ||||||||||||||||| Sbjct 2387 CCGTGCTGCTGAAGACCCTGAGTTCGAAACTTTCTATACTAAAAACATCCTTCTTAACGA 2328 Query 176777 AGGACTAAGAGCATGGATGGCACCTGTGGATCAACCACATGA--GTCATTTGTATTCCCA 176834 ||| | | || |||||||| | || ||||| || || ||| | |||||||| Sbjct 2327 AGGTATCCGTGCTTGGATGGCTGCGCAAGACCAACCTCACGAACGTC--TAGTATTCCCT 2270 Query 176835 GAAGAAGTTCTACCTAGAGGTAACGC 176860 |||||||| |||| | |||||||| Sbjct 2269 GAAGAAGTATTACCGCGTGGTAACGC 2244 Score = 206 bits (228), Expect = 4e-48 Identities = 341/487 (70%), Gaps = 10/487 (2%) Strand=Plus/Minus Query 175863 GAAGACTGGCTTC-TCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATTACTACTTCT 175921 || |||||||| | ||| ||| | || | ||| | || ||||| || ||| ||||| | Sbjct 4487 GATGACTGGCTACGTCA-AGACCGTTTCGTATTTGTAGGTTGGTCAGGTTTATTACTTTT 4429 Query 175922 TCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGTCACGAGTTG 175981 || |||||| |||| | || || ||| | ||||| |||||||| || || || Sbjct 4428 CCCTTGTGCTTACTTTGCACTAGGTGGTTGGTTAACTGGTACAACTTTCGTAACATCATG 4369 Query 175982 GTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCGGCTGT 176041 ||| || |||||| | ||| |||| || | || ||| |||||| | || || ||||| Sbjct 4368 GTATACACATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCAGCTGT 4309 Query 176042 CTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCA 176101 || || ||||| | ||||| || |||||||| | |||||||||| ||| |||| Sbjct 4308 ATCAACACCTGCAAACAGTATGGCACACTCTCTTCTATTTGTTTGGGGTCCAGAAGCTCA 4249 Query 176102 GGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGCTCTCCACGG 176161 || |||||| || ||| |||||||| || | ||| | || || ||| | ||||| Sbjct 4248 AGGTGACTTCACACGTTGGTGTCAACTTGGTGGTTTATGGGCATTCGTAGCTTTACACGG 4189 Query 176162 TGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACTCATTGGTA- 176220 ||| || | | ||||| || ||| | | ||||||||| | || | ||| ||| Sbjct 4188 TGCTTTTTCATTAATTGGCTTTATGTTAAGACAGTTTGAAATTGCTCGT-TCA---GTAA 4133 Query 176221 ---TCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGT 176277 | ||||| || ||||||||||| ||| | || || |||||||||| ||| | Sbjct 4132 ACTTACGTCCATATAACGCTATTGCTTTCTCAGCGCCAATTTCTGTATTTGTTGCTGTTT 4073 Query 176278 TTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAG 176337 | || | |||||| |||||||||| ||||||||||| || ||||||||| || | Sbjct 4072 TCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGCTTTGGTGTAGCTG 4013 Query 176338 CAATCTT 176344 ||||||| Sbjct 4012 CAATCTT 4006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729866734813200