Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq6015 746 0.0 seq3788 271 9e-68 >seq6015 Length=1491 Score = 746 bits (826), Expect = 0.0 Identities = 756/979 (77%), Gaps = 4/979 (0%) Strand=Plus/Minus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 || || |||||| | ||||| || | ||||| | || ||||||||||||| ||| | Sbjct 1350 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 1291 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 ||||| || ||| | | ||||| ||| || |||||| |||| ||| |||||||||| Sbjct 1290 ATGATCCCTTGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCC 1232 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027 || || |||||||| || |||||||| || || ||||||| || | || || ||||| Sbjct 1231 GCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACAA 1172 Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 178087 ||||||| | ||||| || | ||| |||| ||||| |||||| | |||||||| || || Sbjct 1171 CATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAAT 1112 Query 178088 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 178147 |||||||| || | ||||| |||||| | || ||||||||||||| |||||| | || Sbjct 1111 TTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCGT 1052 Query 178148 ATTTCACTTCCTCATTGGTATCTA-TGCATACATGGGACGTGAGTGGGAACTTTCATACC 178206 | ||||||||| | ||| | || ||| |||||||| |||||||||||| | || | || Sbjct 1051 TTGTCACTTCCTTTTAGGTGTATACTGC-TACATGGGTCGTGAGTGGGAATTATCTTTCC 993 Query 178207 GTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGG 178266 ||||||||||||| || |||||| ||| || ||||| ||||||||||| ||||| | Sbjct 992 GTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGCG 933 Query 178267 CAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCA 178326 | |||||| | || || || | || ||||||||||| || || | ||||| | || | Sbjct 932 CTGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGTA 873 Query 178327 TCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACC 178386 || ||||| ||||||| |||| | || |||||||| || |||||||| || ||||||| Sbjct 872 TCAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACC 813 Query 178387 CCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACG 178446 | ||||||||||| ||||| || |||||||| ||||||||| | ||| ||||||||||| Sbjct 812 CATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACG 753 Query 178447 GTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATG 178506 |||| || ||||| || || | | |||||||| ||||||| |||||| ||| | | Sbjct 752 GTTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAG 693 Query 178507 GTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCG 178566 |||| || || ||||||||||| |||||||||||||| ||||| || || ||||||| Sbjct 692 GTTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTCG 633 Query 178567 GTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCG 178626 ||||||| ||||||||||| ||||||||||||||||| |||||| | ||||||||||| | Sbjct 632 GTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTAG 573 Query 178627 CAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTA 178686 | || ||||| || | || || |||||||| || | || | || ||||| || | Sbjct 572 CTGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTCA 513 Query 178687 ACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACA 178746 |||| || || |||||||||||||| || | | ||| |||||| ||||| | |||| Sbjct 512 ACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAACA 453 Query 178747 CATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACG 178806 | ||||||||| | |||||||||| | || |||||||| ||||||||||| |||| Sbjct 452 CTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACG 393 Query 178807 CGCACAACTTCCCGCTTGA 178825 | ||||||||||| || || Sbjct 392 CTCACAACTTCCCTCTAGA 374 >seq3788 Length=5474 Score = 271 bits (300), Expect = 9e-68 Identities = 363/501 (72%), Gaps = 8/501 (2%) Strand=Plus/Minus Query 179736 CAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTA 179795 || |||||||| |||||||| || ||||| ||||| |||||||| || |||||| | || Sbjct 2740 CAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCTGGTGTTTTA 2681 Query 179796 GGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATTGTATGAAGAT 179855 || || || | | ||||||| || || | ||||||||| || ||||| | |||||| Sbjct 2680 GGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTCGAAGAT 2621 Query 179856 GGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCT 179915 || || || || || || || || | | ||||||| ||||| ||||| || Sbjct 2620 GGTGACGGTGCTAACACGTTCCGTGCCTTCAACCCTACACAGGCTGAAGAAACTTACTCA 2561 Query 179916 ATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGG 179975 ||||| || |||||||| |||||||| || || || ||| | || || ||||||||||| Sbjct 2560 ATGGTAACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTCTCTAACAAGCGT 2501 Query 179976 TGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACA--TCCTCTATTG 180033 ||| | || || |||||| | || || || || | ||| || |||| | ||||| | Sbjct 2500 TGGTTACACTTCTTCATGCTTTTAGTTCCCGTGACGGGGCTTTGGATGAGTGCTCTA--G 2443 Query 180034 GCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAG 180093 | || ||||| | ||||| |||||||||||||| || |||||| || || ||| | | Sbjct 2442 GTGTTGTTGGTTTAGCTCTTAACCTTCGTGCTTATGACTTCGTATCACAAGAAATCCGTG 2383 Query 180094 CAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAATGAAGGAC 180153 | || ||||| || ||||| || || ||||| || || ||||| ||||| || ||||| Sbjct 2382 CTGCTGAAGACCCTGAGTTCGAAACTTTCTATACTAAAAACATCCTTCTTAACGAAGGTA 2323 Query 180154 TACGTGCATGGTTGGCACCAGTTGATCAACCACATGA--GTCATTCGTATTCCCAGAAGA 180211 | ||||| ||| |||| | || ||||| || || ||| | |||||||| ||||| Sbjct 2322 TCCGTGCTTGGATGGCTGCGCAAGACCAACCTCACGAACGTC--TAGTATTCCCTGAAGA 2265 Query 180212 AGTTCTGCCAAGAGGTAATGC 180232 ||| | || | ||||| || Sbjct 2264 AGTATTACCGCGTGGTAACGC 2244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605957407423200