Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq6015 780 0.0 seq3788 242 4e-59 >seq6015 Length=1491 Score = 780 bits (864), Expect = 0.0 Identities = 770/990 (78%), Gaps = 4/990 (0%) Strand=Plus/Minus Query 158378 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 158437 ||| || |||||| | ||||| || | ||||| | || ||||||||||||| ||| | Sbjct 1351 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAAT 1292 Query 158438 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 158496 ||||| || ||| | | ||||| ||| || |||||| |||| ||| ||||||||| Sbjct 1291 CATGATCCCTTGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTC 1233 Query 158497 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 158556 | || || |||||||| || |||||||| || || ||||||| || | || ||||||| Sbjct 1232 CGCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACA 1173 Query 158557 ACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 158616 |||||||| | ||||| || | ||| |||| ||||| |||||| | |||||||| || | Sbjct 1172 ACATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAA 1113 Query 158617 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 158676 | |||||||| || | ||||| |||||| | || ||||||||||||| |||||| | | Sbjct 1112 TTTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCG 1053 Query 158677 TCTTTCACTTCCTTATCGGCATCTA-TGCATATATGGGACGTGAATGGGAACTTTCATAC 158735 | | |||||||||| | || | || ||| || ||||| ||||| |||||| | || | | Sbjct 1052 TTTGTCACTTCCTTTTAGGTGTATACTGC-TACATGGGTCGTGAGTGGGAATTATCTTTC 994 Query 158736 CGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCT 158795 || ||||||||||| || |||||| ||| || || || || ||||| |||||||| Sbjct 993 CGTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGC 934 Query 158796 GCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGT 158855 ||||||||| | || || || | || |||||||| ||||| |||| ||||||| | ||| Sbjct 933 GCTGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGT 874 Query 158856 ATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCAC 158915 ||| |||||||| |||| |||| | ||||||||||| || |||||||||||||||||| Sbjct 873 ATCAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCAC 814 Query 158916 CCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAT 158975 || ||||| ||| | ||||||||||| ||||| ||||| || | |||||||| ||||| Sbjct 813 CCATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCAC 754 Query 158976 GGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTAT 159035 || | |||||||| || | | |||||||| ||||||| || ||| ||| | Sbjct 753 GGTTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 694 Query 159036 GGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTC 159095 |||||| || || ||||||||||||||||| || ||||| ||||| || ||||||||| Sbjct 693 GGTTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTC 634 Query 159096 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 159155 |||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||| Sbjct 633 GGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTA 574 Query 159156 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTC 159215 ||||| ||||| ||| |||| || |||||||| || | || | ||||| ||||| ||| Sbjct 573 GCTGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTC 514 Query 159216 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 159275 ||||| |||||||||||||||||||| || | | || || |||||||| || ||| Sbjct 513 AACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAAC 454 Query 159276 ACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAAC 159335 || |||||||| | | |||||||| | ||||||||||| ||||| ||||||||| Sbjct 453 ACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAAC 394 Query 159336 GCACACAACTTCCCACTCGACCTTGCTGCT 159365 || ||||||||||| || ||| | ||| || Sbjct 393 GCTCACAACTTCCCTCTAGACTTAGCTTCT 364 >seq3788 Length=5474 Score = 242 bits (268), Expect = 4e-59 Identities = 359/506 (71%), Gaps = 2/506 (0%) Strand=Plus/Minus Query 160412 CAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTGCTGGTATACTA 160471 ||||| || || |||||||| || ||||| ||||| |||||||| || |||||| | || Sbjct 2740 CAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCTGGTGTTTTA 2681 Query 160472 GGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGAT 160531 || || || | | |||| || || || | ||||||||| |||||| | | |||||| Sbjct 2680 GGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTCGAAGAT 2621 Query 160532 GGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCT 160591 || || || || || || || || | | ||||||| ||||| ||||| || Sbjct 2620 GGTGACGGTGCTAACACGTTCCGTGCCTTCAACCCTACACAGGCTGAAGAAACTTACTCA 2561 Query 160592 ATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGG 160651 ||||| || |||||||| |||||||| || || || ||| | || || ||||||||||| Sbjct 2560 ATGGTAACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTCTCTAACAAGCGT 2501 Query 160652 TGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCAGTATTGGC 160711 ||| | || || |||||| | || || || || | ||| ||||||| | | || Sbjct 2500 TGGTTACACTTCTTCATGCTTTTAGTTCCCGTGACGGGGCTTTGGATGAGTGCTCTAGGT 2441 Query 160712 ATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCA 160771 || ||||| | ||||| || ||||||||||| || ||||| ||||| || | || Sbjct 2440 GTTGTTGGTTTAGCTCTTAACCTTCGTGCTTATGACTTCGTATCACAAGAAATCCGTGCT 2381 Query 160772 GCAGAAGATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTACTGAATGAAGGACTA 160831 || ||||| || || || || || ||||| || || |||||||| || || ||||| | Sbjct 2380 GCTGAAGACCCTGAGTTCGAAACTTTCTATACTAAAAACATCCTTCTTAACGAAGGTATC 2321 Query 160832 CGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTA-TCTTCCCAGAAGAAGT 160890 ||||| ||| | || | |||||||| || || | | || | ||||| |||||||| Sbjct 2320 CGTGCTTGGATGGCTGCGCAAGACCAACCTCACGA-ACGTCTAGTATTCCCTGAAGAAGT 2262 Query 160891 TCTTCCTAGAGGCAACGCCCTTTAAT 160916 | || | || ||||| || |||| Sbjct 2261 ATTACCGCGTGGTAACGCTCTATAAT 2236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552426018211200