Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq6015 774 0.0 seq3788 284 1e-71 >seq6015 Length=1491 Score = 774 bits (858), Expect = 0.0 Identities = 766/988 (78%), Gaps = 2/988 (0%) Strand=Plus/Minus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 || || |||||| | || || || | || ||||| || | |||||||||||||| | Sbjct 1350 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 1291 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||| | ||| ||||||| ||| || |||||| | |||||| | || || || Sbjct 1290 ATGATCCCTTGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCC 1232 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 || || || || || || |||||||| || || ||||||| || | || || ||||| Sbjct 1231 GCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACAA 1172 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 ||||||| | |||||||| |||||| ||| ||||| |||||| ||||||||||||| || Sbjct 1171 CATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAAT 1112 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159 |||||||| || | || || |||||| | || ||||||||||||| |||||| | || Sbjct 1111 TTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCGT 1052 Query 179160 CTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 179219 | ||||||||| | || | || ||| ||||| |||||||||||| | |||| ||| Sbjct 1051 TTGTCACTTCCTTTTAGGTGTATACTGCTACATGGGTCGTGAGTGGGAATTATCTTTCCG 992 Query 179220 TCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGC 179279 | |||||||||||||||||||| |||||| ||||| || ||||| ||||| || || || Sbjct 991 TTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGCGC 932 Query 179280 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTAT 179339 |||||| | || || || | || |||||||| ||||| |||| ||||||| | ||||| Sbjct 931 TGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGTAT 872 Query 179340 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 179399 | |||||||| |||| |||| | ||||||||||| || |||||||||||||||||||| Sbjct 871 CAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 812 Query 179400 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 179459 ||||| ||| | ||||||||||| ||||| ||||| || | |||||||| |||||||| Sbjct 811 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGG 752 Query 179460 AAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAGACAGAGTCACAGAACTATGG 179519 | |||||||| ||| | | |||||||||||||| | || ||| ||| | || Sbjct 751 TTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAGG 692 Query 179520 TTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGG 179579 ||| || || ||||||||||| || || |||||||| ||||| || || |||||||| Sbjct 691 TTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTCGG 632 Query 179580 TCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTGC 179639 |||||| ||||||||||| || || || |||||||| || || || ||||||||||| || Sbjct 631 TCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTAGC 572 Query 179640 TGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAA 179699 ||| ||||| ||| |||| || |||||||| ||| | || | ||||| ||||| ||||| Sbjct 571 TGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTCAA 512 Query 179700 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACAC 179759 ||| |||||||||||||||||||| || | | ||| ||||| ||||| | ||||| Sbjct 511 CCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAACAC 452 Query 179760 ATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACGC 179819 ||||| ||| | | |||||||| || ||||||||||| ||||| ||||||||||| Sbjct 451 TTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGC 392 Query 179820 ACACAACTTCCCACTCGACCTTGCTGCT 179847 ||||||||||| || ||| | ||| || Sbjct 391 TCACAACTTCCCTCTAGACTTAGCTTCT 364 >seq3788 Length=5474 Score = 284 bits (314), Expect = 1e-71 Identities = 369/508 (73%), Gaps = 4/508 (1%) Strand=Plus/Minus Query 180525 CTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCT 180584 || ||| | || |||||||| |||||||| || ||||| ||||| |||||||| || ||| Sbjct 2749 CTATTTTTCCAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCT 2690 Query 180585 GGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTG 180644 ||| | ||||||| || || ||| || || || || | ||||| || |||||| | Sbjct 2689 GGTGTTTTAGGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTA 2630 Query 180645 TATGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAA 180704 | |||||||| || || ||||| || || || | | || || | || ||| Sbjct 2629 TTCGAAGATGGTGACGGTGCTAACACGTTCCGTGCCTTCAACCCTACACAGGCTGAAGAA 2570 Query 180705 ACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCT 180764 |||||||| ||||| || |||||||| |||||||| || || || ||| | || || ||| Sbjct 2569 ACTTACTCAATGGTAACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTCTCT 2510 Query 180765 AACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACA--T 180822 |||||||| ||| | || || |||||| | || || || || | ||| || |||| | Sbjct 2509 AACAAGCGTTGGTTACACTTCTTCATGCTTTTAGTTCCCGTGACGGGGCTTTGGATGAGT 2450 Query 180823 CCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAG 180882 ||||| || || ||||| | ||||| |||||||||||||| || ||||| |||| Sbjct 2449 GCTCTA--GGTGTTGTTGGTTTAGCTCTTAACCTTCGTGCTTATGACTTCGTATCACAAG 2392 Query 180883 AGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGA 180942 | ||| | || || ||||| ||||||||||| || ||||| || || |||||||| | | Sbjct 2391 AAATCCGTGCTGCTGAAGACCCTGAGTTCGAAACTTTCTATACTAAAAACATCCTTCTTA 2332 Query 180943 ATGAAGGACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCC 181002 | ||||| | ||||| ||| |||| | || ||||| |||||| | | |||| Sbjct 2331 ACGAAGGTATCCGTGCTTGGATGGCTGCGCAAGACCAACCTCACGAACGTCTAGTATTCC 2272 Query 181003 CTGAAGAAGTTCTACCAAGAGGTAACGC 181030 |||||||||| |||| | |||||||| Sbjct 2271 CTGAAGAAGTATTACCGCGTGGTAACGC 2244 Score = 253 bits (280), Expect = 2e-62 Identities = 357/501 (71%), Gaps = 8/501 (2%) Strand=Plus/Minus Query 180018 TGGTTCGATGTCCTGGACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGGTCT 180077 ||||| |||| | || |||||||| | ||||| || |||||||| || ||||| Sbjct 4502 TGGTTTGATGACGCTGATGACTGGCTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTCA 4443 Query 180078 GGACTACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCT 180137 || || ||||| | || |||||| |||| | || |||||| | ||||| ||| || Sbjct 4442 GGTTTATTACTTTTCCCTTGTGCTTACTTTGCACTAGGTGGTTGGTTAACTGGTACAACT 4383 Query 180138 TTTGTCACGAGTTGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTT 180197 || || || ||||| || || ||| | ||| |||| || | |||||| |||||| Sbjct 4382 TTCGTAACATCATGGTATACACATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 4323 Query 180198 CTTACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGG 180257 | || |||||||| || || ||||| || ||||| || |||||||| | ||||| Sbjct 4322 TTAACTGCAGCTGTATCAACACCTGCAAACAGTATGGCACACTCTCTTCTATTTGTTTGG 4263 Query 180258 GGTCCTGAGTCTCAGGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTTC 180317 ||||| || |||| || | ||| ||| ||||| |||||||| || | ||| ||| Sbjct 4262 GGTCCAGAAGCTCAAGGTGACTTCACACGTTGGTGTCAACTTGGTGGTTTATGGGCATTC 4203 Query 180318 GTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGGCA 180377 || ||| | |||||||| || | ||||||| |||||| || | ||||||||| | || Sbjct 4202 GTAGCTTTACACGGTGCTTTTTCATTAATTGGCTTTATGTTAAGACAGTTTGAAATTGCT 4143 Query 180378 CGTCTTATTGGTA----TCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGT 180433 ||| | ||| | ||||| || || |||||||| ||||| | || || |||| Sbjct 4142 CGT----TCAGTAAACTTACGTCCATATAACGCTATTGCTTTCTCAGCGCCAATTTCTGT 4087 Query 180434 ATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTC 180493 |||||| || || || || |||||| | ||||| || |||||||||||||||| Sbjct 4086 ATTTGTTGCTGTTTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCTAG 4027 Query 180494 TTTTGGGGTAGCAGCAATCTT 180514 ||||| ||||| |||||||| Sbjct 4026 CTTTGGTGTAGCTGCAATCTT 4006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610277035363200