Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq34 111 5e-19 seq3574 98.7 3e-15 seq222 96.9 1e-14 seq263 86.0 2e-11 >seq34 Length=156822 Score = 111 bits (122), Expect = 5e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 256115 CTGCGCAACCAGATCGAGGAGCACGGACTGCGCAACTCGCAACGATTGGCGCCCATGCCA 256174 |||||| || |||||| ||||| |||||||||||| | ||||||||||||| Sbjct 79769 CTGCGCGACAAGATCGCCCGCCACGGCGTGCGCAACTCGCTGCTGGTGGCGCCCATGCCC 79710 Query 256175 ACCGCCAGCACCGCTCAAATCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAAC 256234 || ||||||||| || |||||||| ||| || || | || ||| || ||||| Sbjct 79709 ACGGCCAGCACCAGCCAGATCCTGGGCAACAACGAGTGCTTTGAGCCCTACACCTCCAAC 79650 Query 256235 TTCTTCTCGCGCCGCGTTCGCTCCGGCGAGTTCGCCGTGGTGAACCAGTACTTGGTGGAC 256294 ||| | ||||||||| | || ||||||||| |||| || |||||| || || || || Sbjct 79649 ATCTACGTGCGCCGCGTGCTGTCGGGCGAGTTCACCGTCGTCAACCAGCACCTGCTGCAC 79590 Query 256295 GACTTG 256300 ||| || Sbjct 79589 GACCTG 79584 >seq3574 Length=6273 Score = 98.7 bits (108), Expect = 3e-15 Identities = 124/169 (73%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 |||| |||||| || || || || || | || || || | || || |||| ||| Sbjct 5654 CTTCTCCGAGCGCCTCGTGGCCTTCGCGGCCGTGGAGGGCATCTTTTTCTCCGGCTCCTT 5713 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 || |||||||||||| | || |||||||| || |||| ||| || ||||| |||| Sbjct 5714 CTGC-TCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCACCTTCTCCAACG 5772 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867 | || ||||| || |||||||| |||| |||||||||||||| || || Sbjct 5773 AGCTCATCAGCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTGCT 5821 >seq222 Length=84561 Score = 96.9 bits (106), Expect = 1e-14 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 |||||||||| |||||||| |||||||| ||||||||||||||||||||||| || || Sbjct 73500 CACTTTTACGCTTGGCGAAAGGGCCTGAAAACGGGCATGTACTACCTGCGCACGCGGCCT 73441 Query 256595 GCGGCCGACCCGATCCAATTCACCGT 256620 || || || ||||| | |||||||| Sbjct 73440 GCCGCGGATGCGATCAAGTTCACCGT 73415 Score = 86.0 bits (94), Expect = 2e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 |||||| |||| ||| | || || || ||| || ||| || ||||| || || ||||| Sbjct 74920 CGGCATCGTACCCATGCTGCGCGTCTTTAACGACACGGCGCGTTACGTGGACCAGGGGGG 74861 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATT 255085 ||| || ||| || ||||| |||| ||||||||||| |||||||| |||||| Sbjct 74860 CGGAAAGCGCAAGGGGGCGTTTGCCATTTACCTGGAGCCCTGGCACGCTGACATT 74806 >seq263 Length=80451 Score = 86.0 bits (94), Expect = 2e-11 Identities = 85/109 (78%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 443753 CAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTA 443812 |||||| || |||||||||||| | || ||||| || || |||| ||| ||| | ||| Sbjct 27834 CAGCTTCTGC-TCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGTCGTTTT 27892 Query 443813 GTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTG 443861 |||| ||| ||||| || |||||||| |||| |||||||| ||||| Sbjct 27893 CCAACGTACTCATCAGCCGCGACGAGGGCCTGCACTGCGACTTTGCCTG 27941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588195784676050