Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq222 89.7 6e-13 seq34 87.8 2e-12 seq32 87.8 2e-12 >seq222 Length=84561 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 135378 AATGGCCGGTGGTCTCATGCAACTTGTCGCTTACGGCGCCCAAGACGTCTACTTGACTGG 135437 ||||| || ||||| |||||||| ||||||||||| || || ||| ||||| ||||||| Sbjct 63487 AATGGGTGGCGGTCTAATGCAACTCGTCGCTTACGGTGCTCAGGACATCTACCTGACTGG 63428 Query 135438 TAACCCAAAGGTTACCTTCTTCCAAGCTGTCTACAAGCGTCACACTAACTTCGCGATGGA 135497 ||||| || | || || ||| | | || || |||||||| ||||| || ||||| Sbjct 63427 CAACCCCCAGATCACGTTTTTCAAGGTCGTGTATCGCCGTCACACCAACTTTGCCATGGA 63368 Query 135498 AAACATCGAACA 135509 |||||| || Sbjct 63367 GTCCATCGAGCA 63356 >seq34 Length=156822 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 111278 GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 111337 |||||||| | || || || || | |||||| | ||| || || |||| |||| ||| Sbjct 80890 GTGTACTCGATGATCTCGGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTGG 80949 Query 111338 TTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 111397 || ||||| |||||| || |||||||| ||||||||||| | ||||||||| ||| Sbjct 80950 TTGCTCTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGGTTGCCCGTCTCCACCTGG 81009 Query 111398 GATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTC 111456 | | || || || ||| | | | || || | || | | |||||| ||||| Sbjct 81010 GCCTCCAGGATGGCGAACCACAGCTGCTGC-GCGCGCACCACGCGCTTGGCCTTGCCCTC 81068 Query 111457 CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCC 111496 | ||||||||| |||| || | || |||| ||| ||| Sbjct 81069 GGACTCGTACTTGTTGTACAGCTCCTCGAACTTCTCGCCC 81108 >seq32 Length=161680 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| |||||||| || || || || || |||||||| ||| || || Sbjct 59411 GCAAAGTCGCAGTGTAGACCCTCGTCCCGAGAGATGAGCTCATTTGAAAAGGTGAGCCCC 59470 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 |||||||| || || || || | ||| | || ||||||||||| || ||||| ||||| Sbjct 59471 GGCATGAGCCCGCGTTTTTTGAGCCAGAAGATGGCGCAGAATGAGCCCGAGAAAAAGATG 59530 Query 122779 CCCTCCAC 122786 ||||| || Sbjct 59531 CCCTCGAC 59538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627977910744000