Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq222 176 6e-39 seq32 100 4e-16 >seq222 Length=84561 Score = 176 bits (194), Expect = 6e-39 Identities = 566/868 (65%), Gaps = 28/868 (3%) Strand=Plus/Plus Query 118703 AGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTAT 118762 |||||| || || |||||||| || || || | ||||| || |||||||| | Sbjct 74374 AGGAAGCGCAATGGACGCCAGGTTGCAGACCGCCGTCTCGTCGGGGCTGGTGTACTCGAG 74433 Query 118763 AATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGT 118822 || |||||||| | ||| | ||| |||||||||| | | || || ||| Sbjct 74434 GATCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATGTTGCTGGTTGCTCTTGCG 74493 Query 118823 GTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAAT 118882 ||| || | ||||||||| |||||||| || || |||||||| | || | | || || Sbjct 74494 GTTGCAGGAATCCTTGTATAGCATGTACGGGGTACCCGTCTCGATCTGCGCATCCAGGAT 74553 Query 118883 AGCCTTCCAGACATCGGCAGCTGGCACAG-TGGCGTTG---GCTCGCCCCTCTTCCTCGT 118938 || ||| || | || | ||| | | | | ||| || |||||||| ||||| Sbjct 74554 GGCAAACCA--CAGCTGCTG--GGCGCGGATCGTCTTGCGCGCACGCCCCTCGCGCTCGT 74609 Query 118939 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT 118998 | |||||||| |||||||| || ||| | || | || || || |||| | Sbjct 74610 AGCGCGTGTAGAGCCGCTCAAACTCGTCGCCCCAGCAGTCCGCTAGTCCAGGCGCCTCGT 74669 Query 118999 CTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGA 119058 ||||| ||||| ||||| | || || |||| ||||||| |||||||||||| || Sbjct 74670 TGGGGCAAAAGAGCGACCACTCCGCATCCGCCTCGACCCGCTGCATGAAGAGGTCGTTGA 74729 Query 119059 TCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCA 119118 ||| | || ||| | ||||| ||| | || || | ||| || || |||| Sbjct 74730 CCCACATGGCAAGGAACAAGTCCCGCGCGCGCGACTCCTCTTTCCCGTGGTTCTTGCGCA 74789 Query 119119 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCT 119178 ||| | ||||| | || || |||||||| || |||||||| | || | | ||||| Sbjct 74790 GCTCGATGAAGTCAAAAATGTCAGCGTGCCAGGGCTCCAGGTAAATGGCAAACGCCCCCT 74849 Query 119179 TACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTG 119235 | || | || |||||| || || | ||| ||| ||||||| || || ||||| | Sbjct 74850 TGCGCTTTCCGCCCCCCTGGTCCACGTAACGCGCCGTGTCGTTAAAGACGCGCAGCATGG 74909 Query 119236 GAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACAT 119295 | | ||| || | ||| ||| || || || || ||| || |||| | || | Sbjct 74910 GTACGATGCCGTTGGACGTGCCGTTGGTGCCGCGGATATAGGAGCCGGTGGCACGGATGT 74969 Query 119296 CGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGAC 119355 |||| ||| || || || || || || ||| || || ||||||||| |||| Sbjct 74970 CGTGAATGGACAGGCCGATGCCACCCGCGTTCTTGGAAATGACCGCGCACTCTTTGAGCG 75029 Query 119356 TGCCGTAGATCCCATCGA-----TCG-AG---TCACCCTT-ATTTGCGATGAGGAAGC-- 119403 || | || || || |||| ||| || || ||||| || ||| | ||||||| Sbjct 75030 TGTCATAAATGCCCTCGATGCTGTCGCAGCCATCGCCCTTCATGTGC-ACCAGGAAGCAC 75088 Query 119404 -AGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATG 119462 |||| ||| ||||| | || || |||| ||||||||| || || | |||||| || Sbjct 75089 GAGCT---CATCTGAGGGCGCGGCGTGCCAGAGTTGAAGAGCGTGGGCGACGCGTGCGTG 75145 Query 119463 AACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGA 119522 || | | |||||| || || ||||| | | || | ||| | | |||| Sbjct 75146 AAACGGCGCTCCGACATCAGGTGATACGTCTCGATGGCGCTCTCCAGGTCGTGCGCGTGG 75205 Query 119523 ATACCGATCGAGACCCGCATAAACATGT 119550 || || | || ||| ||||| | ||||| Sbjct 75206 ATGCCCAGCGCGACGCGCATGAGCATGT 75233 >seq32 Length=161680 Score = 100 bits (110), Expect = 4e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| ||||||||||| || |||||||| ||||| || ||| || || Sbjct 59411 GCAAAGTCGCAGTGTAGACCCTCGTCCCGAGAGATGAGCTCATTTGAAAAGGTGAGCCCC 59470 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 |||||||| || || || || | |||||| || || || |||||||| ||||| ||||| Sbjct 59471 GGCATGAGCCCGCGTTTTTTGAGCCAGAAGATGGCGCAGAATGAGCCCGAGAAAAAGATG 59530 Query 130136 CCCTCCAC 130143 ||||| || Sbjct 59531 CCCTCGAC 59538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618381937268400