Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq222 143 8e-29 >seq222 Length=84561 Score = 143 bits (158), Expect = 8e-29 Identities = 231/328 (70%), Gaps = 23/328 (7%) Strand=Plus/Plus Query 177742 TCAATTACTATAAGCTAGCCCGCCCATACCAGACATAATTCTGAGGACATTGTAGTTGGT 177801 ||||||||| || |||| || ||||| || |||||| | ||||| ||||||||| | Sbjct 62080 TCAATTACTGTAGGCTAAGCCACCCATGCCGCTCATAATCCGCAGGACGTTGTAGTTGAT 62139 Query 177802 GGCGTATACGCGGACCTTGGCAGTGTTGG------TACCGCCA---ACGGTA----GCA- 177847 |||||| | |||||||||||| ||| || | |||| ||||| | | Sbjct 62140 GGCGTAGATGCGGACCTTGGCGGTGCGGGGGGTCGTCGCGCCGTTGACGGTCTTCTGGAC 62199 Query 177848 --TTG-----GAAAGAACAAGCTGGAGTGTAGCATTGTCAATGCGTGAGAAATTGCAGGT 177900 ||| | || | ||| || ||||||||||||||||| ||||| |||||||| Sbjct 62200 GGTTGAGGGCGTCAGGGTCATCTGCAGGGTAGCATTGTCAATGCGCGAGAAGTTGCAGGT 62259 Query 177901 TCCTGATGGCTGGTGCTCCTCGGGCCGAAGGGCGAAGGAGTAGAGATTGATACCAGTGTC 177960 || || ||||||||||||||||| || ||| |||||||||| | ||||| || || Sbjct 62260 GCCCGACGGCTGGTGCTCCTCGGGGCGCAGGCCGAAGGAGTAAACGTTGATGCCCTTG-G 62318 Query 177961 AGGGGATCGGGT-GTGGTGCTGGTAGGGCTGAACAAGGTCGAAGTATGTACCCTCACGCT 178019 | || | | |||||||||||||||||| || |||| | |||| || || || | Sbjct 62319 ACGGCACGTTCTCGTGGTGCTGGTAGGGCTGCACGAGGTTGTAGTAGCGGCCGTCGCGGT 62378 Query 178020 CTGAGAAGCGGTCCTGACCATTAAGCTG 178047 | | | |||||| || || || ||||| Sbjct 62379 CGGCGGTGCGGTCGTGGCCGTTGAGCTG 62406 Score = 102 bits (112), Expect = 2e-16 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 178484 GGCTGAACAACCCAAATGAGCTCTTTGCAAGGGTGATTGAAGTTAAGTTTAATCTTGTTA 178543 ||||| || ||||| | |||||| ||| ||||| |||||||| | || |||||||| Sbjct 62618 GGCTGCACGACCCAGACGAGCTCCTTGGTGGGGTGGTTGAAGTTCATCTTGATCTTGTT- 62676 Query 178544 GAAGATGAACCAACAGA-CTCATCGCCAGTGAACTGGAGCTGCTCAATAAGGTACTCGTG 178602 | | || | | |||||| || |||||||| |||||||| || ||||||||||| Sbjct 62677 GTTGGTGTTGCTGGTGCTCTCATCACCGGTGAACTGCAGCTGCTCGATGAGGTACTCGTG 62736 Query 178603 GGGATTCTGAGCCATACGGCGGCGTTCATCAGTGTCAAGGAAAACATAGTCAACATAGAG 178662 || ||| || | |||||||| || || ||||| ||| | | ||||| ||| |||| Sbjct 62737 GGAGACCTGGGCGAAGCGGCGGCGCTCGTCGGTGTCGAGGTAGATGTAGTCGACAAAGAG 62796 Query 178663 TGATGCCGCAACAAG 178677 || || || || || Sbjct 62797 CGACGCGGCCACCAG 62811 Score = 93.3 bits (102), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 179281 GTATGTGCGGT--ATGCAAGATCACCATTACGGCTGATTGTGCAAGTTACACGACGACCG 179338 ||| ||||||| ||| || || || || || ||||| ||||| || || | Sbjct 63274 GTAGGTGCGGTGAATG--AGGTCGCCGTTGCGACTGATCGTGCAGGTCACCTTCTTGTTG 63331 Query 179339 AAATCAGCCTGGCCGTTGAAAGTTTGTTCAATAGATTCCATAGCAAAATTTGTGTAGCGA 179398 || ||| || ||||||||| || || || || ||||| ||||| || |||| || Sbjct 63332 AAGTCACCCGAGCCGTTGAACACCTGCTCGATGGACTCCATGGCAAAGTTGGTGTGACGG 63391 Query 179399 CGGTAGGTAACCTTCCAAAAAGTAATCTGTGGATTACCTGTAAGGTAAACATCTTGAGCG 179458 || || ||||| |||| || ||||| || || || || ||||| | || ||||| Sbjct 63392 CGATACACGACCTTGAAAAACGTGATCTGGGGGTTGCCAGTCAGGTAGATGTCCTGAGCA 63451 Query 179459 CCATAGGCGACGAGTTGCATTAAGCCTCCTCCCATATTT 179497 || || |||||||||||||||| || || ||||| ||| Sbjct 63452 CCGTAAGCGACGAGTTGCATTAGACCGCCACCCATTTTT 63490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515120636182670