Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq222 185 1e-41 seq32 114 1e-20 seq34 109 6e-19 seq4034 91.5 2e-13 seq2126 89.7 6e-13 seq263 84.2 2e-11 seq589 82.4 9e-11 >seq222 Length=84561 Score = 185 bits (204), Expect = 1e-41 Identities = 563/863 (65%), Gaps = 23/863 (3%) Strand=Plus/Plus Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966 ||||||||| ||||| || ||| ||| || | || |||||| ||| |||||||| Sbjct 74386 GGACGCCAGGTTGCAGACCGCCGTCTCGTCGGGGCTGGTGTACTCGAGGATCTCCGTGCA 74445 Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026 | || |||| || || ||||| | || |||||| |||| |||||| | || Sbjct 74446 GAGGTTGCTGCACTTGATGGTGCCCAGATGTTGCTGGTTGCTCTTGCGGTTGCAGGAATC 74505 Query 81027 CTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAAT 81086 |||||| ||||||||||||||| ||||||| ||| | | |||||||| ||| | Sbjct 74506 CTTGTATAGCATGTACGGGGTACCCGTCTCGATCTGCGCATCCAGGATGGCAAACCACAG 74565 Query 81087 CTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTT 81145 || | || || | |||||| || ||| | | || | ||| ||| Sbjct 74566 CTGCTGGGCGCGGATCGTCTTGCGCGCACGCCCCTCGCGCTCGTAGCGCGTGTAGAGCCG 74625 Query 81146 CGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGG 81204 | || |||| | | || | ||| | | || | || |||||| ||||| | || Sbjct 74626 C-TCAAACTCGTCGCCCCAGCAGTCCGCT-AGTCCAGGCGCCTCGTTGGGGCAAAAGAGC 74683 Query 81205 TGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTG 81264 ||| || | || ||| || || |||||| ||| || ||| | ||| | Sbjct 74684 GACCACTCCGCATCCGCCTCGACCCGCTGCATGAAGAGGTCGTTGACCCACATGGCAAGG 74743 Query 81265 AACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCC 81324 |||| ||| || ||||| |||||| | || ||||| ||||| ||||| ||||| Sbjct 74744 AACAAGTCCCGCGCGCGCGACTCCTCTTTCCCGTGGTTCTTGCGCAGCTCGATGAAGTCA 74803 Query 81325 ATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGA---CGGCCA 81381 | ||||| || ||||| |||||||| || | ||| | || ||||||||| | ||| Sbjct 74804 AAAATGTCAGCGTGCCAGGGCTCCAGGTAAATGGCAAACGCCCCCTTGCGCTTTCCGCCC 74863 Query 81382 CCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCT 81441 ||||||| |||||||| || || ||||||| || |||| ||| || | ||| || | Sbjct 74864 CCCTGGTCCACGTAACGCGCCGTGTCGTTAAAGACGCGCAGCATGGGTACGATGCCGTTG 74923 Query 81442 GACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGA 81501 ||| ||||| || || |||| || || |||| || | | | || || || Sbjct 74924 GACGTGCCGTTGGTGCCGCGGATATAGGAGCCGGTGGCACGGATGTCGTGAATGGACAGG 74983 Query 81502 CCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCC 81561 ||||||||||| | ||| ||||| || ||| || | || |||||||| ||| Sbjct 74984 CCGATGCCACCCGCGTTCTTGGAAATGACCGCGCACTCTTTGAGCGTGTCATAAATGCCC 75043 Query 81562 TCGATGCT---------ATCTTTTTTCATGT---CAAGCAAGAAACAGCTTGACATCTGA 81609 |||||||| ||| ||||||| | || ||| | |||| ||||||| Sbjct 75044 TCGATGCTGTCGCAGCCATCGCCCTTCATGTGCACCAGGAAGCACGAGCT---CATCTGA 75100 Query 81610 GGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGAC 81669 |||| | ||| | ||||| || || || | |||||| ||||| || | ||| Sbjct 75101 GGGCGCGGCGTGCCAGAGTTGAAGAGCGTGGGCGACGCGTGCGTGAAACGGCGCTCCGAC 75160 Query 81670 ATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACA 81729 ||||||| ||| || || || ||| | |||| |||| || || | || || Sbjct 75161 ATCAGGTGATACGTCTCGATGGCGCTCTCCAGGTCGTGCGCGTGGATGCCCAGCGCGACG 75220 Query 81730 CGCATAAACATGTACTG-GGGCG 81751 ||||| | ||||| ||| ||||| Sbjct 75221 CGCATGAGCATGTGCTGCGGGCG 75243 Score = 109 bits (120), Expect = 6e-19 Identities = 327/493 (66%), Gaps = 25/493 (5%) Strand=Plus/Plus Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCG 80415 ||||| || | |||| ||| ||| || | ||| | ||||||||||| || | ||| Sbjct 73769 AACTCGCCAGAGAGGACGCGCCGCGCGTAGATGTTGCTGGTGTAAGGCTCGAACGACTCC 73828 Query 80416 TTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTC 80475 |||| || |||||||| | ||| || |||||||| || | |||| ||| || || Sbjct 73829 GTGTTGCCAAGGATCTGCGACGTCGAAGCGGTCGGCATGGGAGCCACCAGCAGCGAGTTG 73888 Query 80476 CGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCA---AAAATCAACCCCA-AC 80531 ||||| |||||| || || |||||| || ||| ||| || || | Sbjct 73889 CGCAGCCCGTGCGCTGCAATGTCGGCGCGCAGGGCTTCCCAGTCAAAGTCGGGGTCACAT 73948 Query 80532 GCTGTGACC-----CCACATGTCGTGCTGCAAGATGCCCTCCGACG-CCGGAGACCCCGC 80585 || | | | ||||||||| ||||||| || ||| | | | |||| |||| | Sbjct 73949 GCAGGGGGCGGGCTCCACATGTCCTGCTGCAGGACGCCG-CGGCTGACCGGGCTCCCCTC 74007 Query 80586 GAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTG 80645 | |||||||||| | ||| ||| || ||||| | || || || | ||||| || Sbjct 74008 GTACGTCTCGTAGGTGCCGTCCACTTTCGCCAGGGCGCAGGATGCCGTCAGGGCGGCAAA 74067 Query 80646 ATAAATGCACTCAAAGACGCCCTTGTTCA--CACCGCGC-GCCTGTGGGTCGTCGAACGA 80702 || ||||||||||||| |||||| | ||| || ||| | || || |||| Sbjct 74068 GTAGATGCACTCAAAGATCTTCTTGTTGAGCTGCCGTGCTGCC--TCACTC-TCAAACGG 74124 Query 80703 CAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTG 80762 || ||| | || || ||| ||| ||||| ||||| | |||||| |||| || || || Sbjct 74125 CATGCCGAGCAAGATCAACGTGTCCGCCAGTCCCTGGATGCCGATTCCGATGGGACGATG 74184 Query 80763 GCGCTTGTT----CGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGC 80818 ||| |||| || ||| | | ||||| | ||||| |||| || |||| || Sbjct 74185 ACGCATGTTGCTGCG-GCGCGCCGTCTCCG---TCGGGTAGTAGTTGCGGTCAATGATGC 74240 Query 80819 GGTTCAGGTTGCG 80831 |||||||||| || Sbjct 74241 GGTTCAGGTTACG 74253 Score = 105 bits (116), Expect = 8e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 56892 ACTACGTGTACCTGGACACTGAGGAGCGCCGCCGCTTCGCCCAGAAGGGCCACGAGTACC 56951 ||||| | ||||| ||||| || ||||||||||||||||||||| ||||||||||| Sbjct 62786 ACTACATCTACCTCGACACCGACGAGCGCCGCCGCTTCGCCCAGGTCTCCCACGAGTACC 62727 Query 56952 TGATCGAGCAGGTGCAGCACACCGGCGGTGACAGCATCACCAACTCCA 56999 | ||||||||| ||||| |||||| | ||| |||| || |||| ||| Sbjct 62726 TCATCGAGCAGCTGCAGTTCACCGGTGATGAGAGCACCAGCAACACCA 62679 Score = 104 bits (114), Expect = 3e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 56276 AAAATGGCCGGTGGACTTATGCAGCTCGTTGCTTATGGCGCTCAGGATGTGTACCTGACT 56335 ||||||| || || || ||||| ||||| ||||| || |||||||| | ||||||||| Sbjct 63489 AAAATGGGTGGCGGTCTAATGCAACTCGTCGCTTACGGTGCTCAGGACATCTACCTGACT 63430 Query 56336 GGGCAGCCCAAGGTTACCTTCTTCCAGGCGGTGTACAAGCGTCACACCAACTTCGCGATG 56395 || | ||| || | || || ||| ||| ||||| |||||||||||||| || ||| Sbjct 63429 GGCAACCCCCAGATCACGTTTTTCAAGGTCGTGTATCGCCGTCACACCAACTTTGCCATG 63370 Query 56396 GAGAACATCCAGCAGACGGTGAACGGC 56422 ||| |||| ||||| | | |||||| Sbjct 63369 GAGTCCATCGAGCAGGTGTTCAACGGC 63343 Score = 102 bits (112), Expect = 9e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 57419 GGCATCTACGTGTACTCCTTCGCTCTGCAGCCCGAGGAGCACCAGCCAACTGGCACCTGC 57478 |||||| |||| |||||||||| |||| ||||||||||||||||| | ||||||||| Sbjct 62313 GGCATCAACGTTTACTCCTTCGGCCTGCGCCCCGAGGAGCACCAGCCGTCGGGCACCTGC 62254 Query 57479 AACTTCTCTCGCATTGACAACGCT 57502 |||||||| ||||||||||| ||| Sbjct 62253 AACTTCTCGCGCATTGACAATGCT 62230 >seq32 Length=161680 Score = 114 bits (126), Expect = 1e-20 Identities = 283/425 (67%), Gaps = 6/425 (1%) Strand=Plus/Minus Query 31983 GGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTC 32042 |||||| |||||| || || |||||||| | ||| |||| ||||| ||| || | Sbjct 40965 GGACGGGCTCAAGGTGTCGCAACGCAAGGTCCTGTACTGCTGCTTCAAGCGCAACTTGAC 40906 Query 32043 GAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCA 32102 | || || || ||||||||| |||| ||||| | ||||| | || || ||||| Sbjct 40905 GGAGGAGATCCGCGTCGCGCAGCTGGCGGGTTACGTCTCGGAGCACGCTGCATACCACCA 40846 Query 32103 CGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAA 32162 ||||||||| ||| | || |||||||| || || || ||| ||||||| || || Sbjct 40845 CGGCGAGGCATCGTTGCACGGCACCATCATCGGACTGGCGCAGGACTTTGTGGGAAGCAA 40786 Query 32163 TAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGA 32222 ||| || || | || ||||| || ||||| || | ||| || || || ||| | Sbjct 40785 CAACGTGCACCTGCTGGAGCCGGTGGGGCAGTTCGGCAGCCGCCTGGCGGGGGGCGCCAA 40726 Query 32223 TGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGC--ACCTTCGACGCGCAAGATTTTC 32280 |||||| || | |||||| ||| | || || | || ||||||| | | ||| Sbjct 40725 CCACGCGAGCCCCAGGTACATCCACACGCACCTGGCCAAGCT--GACGCGCGTGCTCTTC 40668 Query 32281 GACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCG 32340 |||||||||| ||||| | || ||||| || | ||| |||||| Sbjct 40667 CCGGCGTCGGACGACAGCGTGCTGCCGCTCACCGAGGATGATGGAGTACCGGTGGAGCCG 40608 Query 32341 GTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGG-TGCAGAAGGCATCGGAAC 32399 ||| ||| ||| | || || || || || | ||||| |||| |||||||| || Sbjct 40607 GTGCATTACCTGCCGATCCTCCCCGTGGTCCTGATTAACGGCTGCA-CCGGCATCGGCAC 40549 Query 32400 GGGGT 32404 ||||| Sbjct 40548 GGGGT 40544 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 || || || || || || || || |||||||| | || |||||||| ||||| || || Sbjct 59538 GTCGAGGGCATCTTTTTCTCGGGCTCATTCTGCGCCATCTTCTGGCTCAAAAAACGCGGG 59479 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAA 64857 || ||||| || || | ||||| || ||||| ||||||||||||||||| || ||| Sbjct 59478 CTCATGCCGGGGCTCACCTTTTCAAATGAGCTCATCTCTCGGGACGAGGGTCTACACTGC 59419 Query 64858 GAATTTGCG 64866 || |||||| Sbjct 59418 GACTTTGCG 59410 >seq34 Length=156822 Score = 109 bits (120), Expect = 6e-19 Identities = 165/229 (72%), Gaps = 17/229 (7%) Strand=Plus/Plus Query 80936 CAGCATCTG-TAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGG 80994 ||||| ||| | |||||| ||| || ||||||| || || |||| || || |||||| Sbjct 80881 CAGCACCTGGTGTACTCGATGATCTCGGTGCACAGGTTGGAGCACTTGATGGTGCCCAGG 80940 Query 80995 TTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTC 81054 || | |||||| |||| ||||||| ||||||||||| |||||| ||| | || ||| Sbjct 80941 TTCTGCTGGTTGCTCTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGGTTGCCCGTC 81000 Query 81055 TCGACCTGTGACTTGAGGATGGCGTCCCAAATCT----CGCGCGCCTTGACCAC---CTT 81107 || ||||| | || ||||||||| ||| | || ||||||| ||||| ||| Sbjct 81001 TCCACCTGGGCCTCCAGGATGGCGAACCACAGCTGCTGCGCGCGC----ACCACGCGCTT 81056 Query 81108 GCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTT 81155 | ||||| |||| | | |||||| ||| ||| || |||||||| Sbjct 81057 ---GGCCTTGCCCTCGGACTCGTACTTGTTGTACAGC-TCCTCGAACTT 81101 Score = 96.9 bits (106), Expect = 4e-15 Identities = 119/162 (73%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 81230 CCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCT 81289 || ||||||| ||| |||||||| ||| || ||| ||||||||| ||||||||||| Sbjct 81398 CCCTCATGAACAGGTCGGGGATCCACAGGCCGTAGAAGAGGTCGCGGGCGCGCGCCTCCT 81457 Query 81290 CATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCA 81349 | | || ||||| ||||| ||| || ||||| | | ||| || ||||| ||||||| Sbjct 81458 CCTTGCCGTGGTTCTTGCGCAGCTCCAGGAAGTCAAACACGTCAGCGTGCCAGGGCTCCA 81517 Query 81350 GATACACGGCGATCGACCCCTTGCG---ACGGCCACCCTGGT 81388 || | ||||| | |||||||| | ||| ||||||| Sbjct 81518 TGTAGATGGCGAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGT 81559 >seq4034 Length=4767 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || ||||| || ||||||||||| ||||| ||||| || ||||| |||||||||| || Sbjct 1885 GGCATTCCCCCGGACCAGCAGCGGCTAATCTTTGCCGGGAAGCAGCTCGAGGATGGGCGC 1944 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || ||||| ||||| || |||| ||||| ||| || || || || |||| || || Sbjct 1945 ACGCTAGCGGACTACAACATCCAGAAGGAGAGCACGCTGCACCTGGTGCTGCGCCT--GC 2002 Query 27628 GGTG 27631 |||| Sbjct 2003 GGTG 2006 >seq2126 Length=15993 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || ||||||||||| || || ||||| ||||| Sbjct 728 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACTATCACGCTCGAGGTGGAGTCCTCG 669 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | ||| ||||||| || ||||||||||||||||| Sbjct 668 GACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGG 625 >seq263 Length=80451 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 64765 TTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAAC 64824 ||||| || || |||||||| || ||||| ||||| ||||| || ||||||||||| ||| Sbjct 27838 TTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGTCGTTTTCCAAC 27897 Query 64825 GAGCTGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCAC 64884 | || ||| || |||||||| || ||| || ||||| ||||| || ||| Sbjct 27898 GTACTCATCAGCCGCGACGAGGGCCTGCACTGCGACTTTGCCTGCTGCCTGTACAAGCAC 27957 Query 64885 CTCAAGGAC 64893 |||||| || Sbjct 27958 CTCAAGCAC 27966 >seq589 Length=52745 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/124 (75%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || ||||||||||| || || |||||||| |||||||||||||| | || Sbjct 25480 GGCATCCCCCCGGACCAGCAGCGGCTCATCTTTGCTGGCAAGCAACTCGAGGACGGGCGC 25539 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || || ||||| || |||| ||||| ||| || || || || |||| || || Sbjct 25540 ACGCTCGCCGACTACAACATCCAGAAGGAGAGCACGCTACACCTGGTGCTGCGCCT--GC 25597 Query 27628 GGTG 27631 |||| Sbjct 25598 GGTG 25601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570261282016800