Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq4034 98.7 9e-16 seq589 91.5 1e-13 >seq4034 Length=4767 Score = 98.7 bits (108), Expect = 9e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 |||||||| ||||| || || || || ||||| ||| | || ||||||||||||||| || Sbjct 1646 GCCATGCAAATATTCGTTAAGACCCTTACCGGGAAGACGATCACTCTTGAAGTGGAATCG 1705 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091 || ||| | || |||| ||||| |||||||||||||||||||| Sbjct 1706 TCAGACACAATAGAGAACGTCAAGGCGAAAATTCAAGACAAAGAAGG 1752 >seq589 Length=52745 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||||||||| || || || ||||| || ||| | ||||||||||||||||| |||| Sbjct 25252 CATGCAGATATTCGTGAAGACGCTGACGGGAAAGACGATTACTCTTGAAGTGGAGTCGTC 25311 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091 ||| |||| || | ||||| ||||| || ||||||||||| Sbjct 25312 GGACACGATAGAAAATGTCAAGGCGAAAATCCAGGACAAAGAAGG 25356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434880942652800