Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1357 102 2e-16 seq1127 96.9 8e-15 seq2126 89.7 1e-12 >seq1357 Length=27981 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| ||||| || ||||||||||| || || |||||| Sbjct 4330 CCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATGGTGTCCGACGACTCCACCTCG 4389 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||||||||| |||||||| ||||| ||||| | |||||| Sbjct 4390 AGGGTGATCGTCTTGCCCGTGAGGGTCTTCACAAATATCTGCAT 4433 >seq1127 Length=32976 Score = 96.9 bits (106), Expect = 8e-15 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 211005 GGAACT--CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTT 211062 |||||| || ||||||||||||||||| || || || ||||||||||| ||| | Sbjct 600 GGAACTTACCCTCCTTGTCCTGGATCTTCGCCTTAACATTCTCGATGGTGTCCGAGGACT 659 Query 211063 CAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | |||||||| ||||| ||||| |||||||| ||||| || || | |||||| Sbjct 660 CCACCTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCAT 711 >seq2126 Length=15993 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||| ||||| ||||| || ||||||||||| ||| || |||||| Sbjct 625 CCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAGGACTCCACCTCG 684 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| ||||| || ||||| || || | |||||| Sbjct 685 AGCGTGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159049672234850