Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq678 82.4 7e-11 seq589 82.4 7e-11 >seq678 Length=48865 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 39078 CAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAG 39137 ||| || ||||||||| | | || || || || ||||| || || | |||| ||||| Sbjct 42531 CAAGTGCAGCGTGCTCCCGCTCTGGATGTTGTAGTCGGCCAGGGTGCAGCCGTCCTCAAG 42590 Query 39138 CTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 ||| ||||| ||||| ||||| ||||||||||||| || | | |||| ||||| Sbjct 42591 CTGCTTGCCGGCAAAGATAAGCCGCTGCTGGTCGGCCGGAATGGCCTCTCTGTCC 42645 >seq589 Length=52745 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| |||||||||||||| || || || || || ||||| || || || | Sbjct 25593 GCGCAGCACCAGGTGTAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCC 25534 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 ||| || || || ||||| ||||| || || ||||||||||| | ||| Sbjct 25533 GTCCTCGAGTTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCCGGGGG 25486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429509530250570