Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq5272 100 7e-16 seq5307 93.3 1e-13 >seq5272 Length=2223 Score = 100 bits (110), Expect = 7e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||| |||||||| ||||| |||||||| ||||||||||| || ||||| Sbjct 1393 GAAAATTTGACCATCTGTAATAGAAATAACGTTTGTAGGAATATAAGCAGATACGTCACC 1334 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGT 4559 | |||||||||| |||| || | ||||| Sbjct 1333 TTCTTGTGTTTCTACAATTGGAAGTGCTGT 1304 >seq5307 Length=2176 Score = 93.3 bits (102), Expect = 1e-13 Identities = 86/105 (82%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 1486 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 1428 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATG 6870 ||||| |||| ||| ||||||||||||||| |||| || |||| Sbjct 1427 CAGTGAGGAATTTTTCACAATGGGCGAAAGCCTGATGAAGCAATG 1383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192425925581660