Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq32 95.1 2e-14 >seq32 Length=161680 Score = 95.1 bits (104), Expect = 2e-14 Identities = 293/448 (65%), Gaps = 4/448 (1%) Strand=Plus/Plus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 || || ||||| || || || ||||| || || | | || | || || ||||| ||| Sbjct 59405 AAGCACGCAAAGTCGCAGTGTAGACCCTCGTCCCGAGAGATGAGCTCATTTGAAAAGGTG 59464 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 || || ||||| || || |||||||||||||| || || || ||| || || || || Sbjct 59465 AGCCCCGGCATGAGCCCGCGTTTTTTGAGCCAGAAGATGGCGCAGAATGAGCCCGAGAAA 59524 Query 48258 AATATGCCTTCTACGGCCGCAAATG-CGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTG 48316 || ||||| || || || ||||||| | ||| || | || | || | Sbjct 59525 AAGATGCCCTCGACCGCTGCAAATGCCACCAAGCGCCTGGCGAACACATCCGACG-CCTC 59583 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 |||||| ||||| ||||| | | ||||| |||||||| || || || Sbjct 59584 GATCCACTTCAACGCCCATGTGGCCTTTTGGGTCACACATGGCATTGTCTCAATGGCGCG 59643 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 ||||||| || ||| || | | ||| || | ||| || | | || ||| | Sbjct 59644 AAAGAGACGGTCTTTCTCGTGGACATCCTTGATGTAGTGGTCCAACAGCAGGGAGTACGT 59703 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGAT 48496 ||| ||| | || |||||||| ||||| |||||||||||||| | ||| |||| || Sbjct 59704 CTCGCCGTGGACGTTCTCAATTGCGATCTGGAATCCGTAAAAACAACGCGCCTCTGGGAG 59763 Query 48497 CTGTACCTC-CGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 || ||||| || | || || |||| ||||| || || || |||||| | || Sbjct 59764 TTGCACCTCGCGCA-TGAAGCGCGATGCCAGGTTCTCGTTGACGATGCCATCAGACGTAG 59822 Query 48556 CAAAAAATGCTAATACATGTTTAATAAA 48583 |||| || || | || || || | ||| Sbjct 59823 CAAAGAAAGCGAGCACGTGCTTGAGAAA 59850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694608971649600