Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq1701 104 9e-18 seq1551 87.8 7e-13 >seq1701 Length=21568 Score = 104 bits (114), Expect = 9e-18 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 54942 GTCATGCGTCCGGACAGCACGGCCGTCGTGAGCTTCGCCATGTCCGCGCCAGATGGTGCT 55001 |||||||| || ||| ||| ||| || | |||| |||| || |||| || || Sbjct 7820 GTCATGCGGCCCGACTCCACCGCCATCTTCTCCTTCCCCATTGCCTCGCCGCCCGGCGCC 7879 Query 55002 GTGACCCGTGATCAGGTGACTGCGATGCAGGCC-CTGGAACTGTGGTTACTGTATCAACG 55060 ||||| || || | |||| ||| || || | ||||| ||||| | || || || Sbjct 7880 GTGACGCGCGACGACGTGAGCGCGCTG-AGCCAGCTGGAGCTGTGCCTGGCCTACCAGCG 7938 Query 55061 TGAGTGGTGTGAGCACAAGCCTTCCGTCACTGTCACCGTGCGTGACGAGGAATGGCTGTC 55120 | ||||| ||||||||||| | | || ||||| ||||| || ||||| ||| || Sbjct 7939 CCACTGGTGCGAGCACAAGCCCAGCATAACGGTCACGGTGCGCGAGGAGGAGTGGATGGA 7998 Query 55121 GGTGGGCGCCTGGGTCTATGAGCACTTCGACGAG 55154 ||||||||||||||| || |||||||||||||| Sbjct 7999 GGTGGGCGCCTGGGTGTACAAGCACTTCGACGAG 8032 >seq1551 Length=24174 Score = 87.8 bits (96), Expect = 7e-13 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 54996 GGTGCTGTGACCCGTGATCAGGTGACTGCGATGCAGGCC-CTGGAACTGTGGTTACTGTA 55054 || || ||||| || || | |||| ||| || || | ||||| ||||| | || Sbjct 13 GGCGCCGTGACGCGCGACGACGTGAGCGCGCTG-AGCCAGCTGGAGCTGTGCCTGGCCTA 71 Query 55055 TCAACGTGAGTGGTGTGAGCACAAGCCTTCCGTCACTGTCACCGTGCGTGACGAGGAATG 55114 || || | ||||| ||||||||||| | | || ||||| ||||| || ||||| || Sbjct 72 CCAGCGCCACTGGTGCGAGCACAAGCCCAGCATAACGGTCACGGTGCGCGAGGAGGAGTG 131 Query 55115 GCTGTCGGTGGGCGCCTGGGTCTATGAGCACTTCGACGAG 55154 | || ||||||||||||||| || |||||||||||||| Sbjct 132 GATGGAGGTGGGCGCCTGGGTGTACAAGCACTTCGACGAG 171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187274276199040