Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq6015 706 0.0 seq3788 302 6e-77 >seq6015 Length=1491 Score = 706 bits (782), Expect = 0.0 Identities = 751/988 (76%), Gaps = 2/988 (0%) Strand=Plus/Minus Query 183196 TTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACTG 183255 || || || ||||| || ||| | ||||| | || | |||||||| || | | Sbjct 1350 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 1291 Query 183256 ATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTCC 183314 ||||| || ||| | | ||||| ||| | |||||| | || ||| |||||||||| Sbjct 1290 ATGATCCCTTGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCC 1232 Query 183315 TCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAA 183374 || || |||||||| || ||||| || || || |||| || || | || || ||||| Sbjct 1231 GCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACAA 1172 Query 183375 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCAT 183434 ||||||| | ||||| || | || |||| ||||| ||||| | |||||||| || || Sbjct 1171 CATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAAT 1112 Query 183435 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGT 183494 |||||||| || | || || |||||| | || |||||||||||||||||||| | || Sbjct 1111 TTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCGT 1052 Query 183495 CTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCG 183554 | |||||||| | || || | ||||||||||||||||||||||||||| |||| ||| Sbjct 1051 TTGTCACTTCCTTTTAGGTGTATACTGCTACATGGGTCGTGAGTGGGAATTATCTTTCCG 992 Query 183555 TCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGC 183614 | | ||||||||||| |||||| ||||||||| || || || ||||| || | ||| Sbjct 991 TTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGCGC 932 Query 183615 TGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTAT 183674 ||| ||| | || || || | || |||||||| || ||||||||||| | ||||| Sbjct 931 TGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGTAT 872 Query 183675 CAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 183734 ||| || || || |||| ||| | || |||||||| |||||||||||||| |||||||| Sbjct 871 CAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 812 Query 183735 CTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGG 183794 ||||||||| | ||||| |||||||| || |||||||| | ||| |||||||||||| Sbjct 811 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGG 752 Query 183795 TTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCACAGAACTATGG 183854 ||| | |||||||| ||| | | |||||||| ||||| || ||| ||| | || Sbjct 751 TTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAGG 692 Query 183855 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTGG 183914 |||| || |||||||||||||| || |||||||| || || ||||| || ||||| || Sbjct 691 TTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTCGG 632 Query 183915 TCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTGC 183974 |||| | |||||||| || ||||| || ||||| |||||||| | ||||||||||| || Sbjct 631 TCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTAGC 572 Query 183975 TGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTAA 184034 |||||||||||| |||| || ||||| || ||| | ||| || |||||||| || || Sbjct 571 TGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTCAA 512 Query 184035 CCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACAC 184094 ||| || ||||| ||||||||||| || | | || ||||||||||| | ||||| Sbjct 511 CCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAACAC 452 Query 184095 CTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGC 184154 ||||||||| | ||||||||||| | || |||||||| |||||||||||||| || Sbjct 451 TTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGC 392 Query 184155 TCACAACTTCCCTCTCGACCTTGCTGCT 184182 ||||||||||||||| ||| | ||| || Sbjct 391 TCACAACTTCCCTCTAGACTTAGCTTCT 364 >seq3788 Length=5474 Score = 302 bits (334), Expect = 6e-77 Identities = 368/502 (73%), Gaps = 0/502 (0%) Strand=Plus/Minus Query 186472 TCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCC 186531 ||||||| ||||| |||||||| |||| ||||||||||||||||||||||| ||| | Sbjct 2742 TCCAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCTGGTGTTT 2683 Query 186532 TTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAG 186591 | ||||||||| | | | || || || |||| |||||||||||| || | | |||| Sbjct 2682 TAGGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTCGAAG 2623 Query 186592 ATGGCGAACAAGCAAACACATTCAAAGCATTCGATACGACGCAAGAAGAAGAAACCTATT 186651 |||| || || ||||| ||| || ||| | | || || | |||||||| || | Sbjct 2622 ATGGTGACGGTGCTAACACGTTCCGTGCCTTCAACCCTACACAGGCTGAAGAAACTTACT 2563 Query 186652 CGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTCGGAATTGCGTTTAGCAATAAGC 186711 | ||||| || || ||| | ||||||||||| || || || | || || || |||| Sbjct 2562 CAATGGTAACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTCTCTAACAAGC 2503 Query 186712 GTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATGGGTCTTTGGACCTCTTCCATTG 186771 ||||| | || ||||||||||| || ||||| || | ||| ||||||| | | | | Sbjct 2502 GTTGGTTACACTTCTTCATGCTTTTAGTTCCCGTGACGGGGCTTTGGATGAGTGCTCTAG 2443 Query 186772 GCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGACTTTGTAAGTCAGGAGGTGAGAG 186831 | || ||||| | |||||||||||||||||||||||||| ||| || || | | | Sbjct 2442 GTGTTGTTGGTTTAGCTCTTAACCTTCGTGCTTATGACTTCGTATCACAAGAAATCCGTG 2383 Query 186832 CAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAATATCCTATTGAATGAAGGTC 186891 | || || || ||||||||||| || |||||||| || || ||||| | || |||||| Sbjct 2382 CTGCTGAAGACCCTGAGTTCGAAACTTTCTATACTAAAAACATCCTTCTTAACGAAGGTA 2323 Query 186892 TACGTGCCTGGATGGCACCAGTGGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAG 186951 | ||||| |||||||| | || ||||| || ||| | ||||| |||||||||| Sbjct 2322 TCCGTGCTTGGATGGCTGCGCAAGACCAACCTCACGAACGTCTAGTATTCCCTGAAGAAG 2263 Query 186952 TGTTGCCAAGAGGCAACGCTCT 186973 | || || | || |||||||| Sbjct 2262 TATTACCGCGTGGTAACGCTCT 2241 Score = 232 bits (256), Expect = 8e-56 Identities = 350/498 (70%), Gaps = 0/498 (0%) Strand=Plus/Minus Query 185957 ATGGTTCGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTC 186016 |||||| |||| | ||||||||||| | ||||| || || ||||| || ||||| Sbjct 4503 ATGGTTTGATGACGCTGATGACTGGCTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTC 4444 Query 186017 TGGATTACTTCTTTTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAAC 186076 || ||| | ||||| || |||||| | ||| | ||||| ||| | ||||| ||||| Sbjct 4443 AGGTTTATTACTTTTCCCTTGTGCTTACTTTGCACTAGGTGGTTGGTTAACTGGTACAAC 4384 Query 186077 GTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTT 186136 || || || |||||||| || || || || |||||||| | || ||| ||| || Sbjct 4383 TTTCGTAACATCATGGTATACACATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 4324 Query 186137 TCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTG 186196 | || ||||| || ||||| ||||| || ||||| || |||||||| | |||| Sbjct 4323 CTTAACTGCAGCTGTATCAACACCTGCAAACAGTATGGCACACTCTCTTCTATTTGTTTG 4264 Query 186197 GGGTCCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTT 186256 |||||| || ||||||| || ||| || |||| |||||||| || | ||| || Sbjct 4263 GGGTCCAGAAGCTCAAGGTGACTTCACACGTTGGTGTCAACTTGGTGGTTTATGGGCATT 4204 Query 186257 TGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAG 186316 || || | ||||| || ||| | | || || || ||| | ||||||||||||| Sbjct 4203 CGTAGCTTTACACGGTGCTTTTTCATTAATTGGCTTTATGTTAAGACAGTTTGAAATTGC 4144 Query 186317 TCGTCTCGTAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTT 186376 |||| ||| | |||||||| || || |||||||| || | || || |||| || Sbjct 4143 TCGTTCAGTAAACTTACGTCCATATAACGCTATTGCTTTCTCAGCGCCAATTTCTGTATT 4084 Query 186377 TGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTT 186436 |||| ||| ||||| || ||||| | || || || |||||||| ||||| ||| Sbjct 4083 TGTTGCTGTTTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGCTT 4024 Query 186437 TGGAGTCGCAGCAATCTT 186454 ||| || || |||||||| Sbjct 4023 TGGTGTAGCTGCAATCTT 4006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622016824186800