Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq6015 798 0.0 seq3788 338 7e-88 >seq6015 Length=1491 Score = 798 bits (884), Expect = 0.0 Identities = 780/996 (78%), Gaps = 18/996 (2%) Strand=Plus/Minus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 || ||| | ||| | || || || | || ||| | || |||||||||||||||| | Sbjct 1350 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 1291 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||| || || |||| | ||| || |||||| |||||||| |||||||||| Sbjct 1290 ATGATCCCTTGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCC 1232 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 || || |||||||| || |||||||| || || ||||||| || | || || ||||| Sbjct 1231 GCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACAA 1172 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 |||||| | |||||||| | || ||||||||||||||||| | |||||||| || || Sbjct 1171 CATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAAT 1112 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896 |||||||| ||| |||| || |||||| | ||||| |||||||||| |||||| | | Sbjct 1111 TTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCGT 1052 Query 177897 CTTCCACTTCCTGATCGGTATCTA-TGCATACATGGGTCGTGAGTGGGAACTTTCTTACC 177955 | |||||||| | ||| | || ||| ||||||||||||||||||||| | |||| || Sbjct 1051 TTGTCACTTCCTTTTAGGTGTATACTGC-TACATGGGTCGTGAGTGGGAATTATCTTTCC 993 Query 177956 GCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTG 178015 | ||||||||||||| |||||| ||| || ||||| |||||||| || ||||| | Sbjct 992 GTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGCG 933 Query 178016 CTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTA 178075 |||||||| | ||||| || | || |||||||| ||||| || | |||||| | |||| Sbjct 932 CTGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGTA 873 Query 178076 TCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 178135 |||| || || ||||||| |||| | || |||||||| |||||||||||||| ||||||| Sbjct 872 TCAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACC 813 Query 178136 CCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACG 178195 | ||||||||||| || || |||||||| ||||||||||| | ||| ||| ||||||| Sbjct 812 CATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACG 753 Query 178196 GTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCAG--AACTA 178253 |||| | |||||||| ||| | | |||||||| || || |||||| |||| ||| | Sbjct 752 GTTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAA--TCAGCTAACGA 695 Query 178254 TGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTT 178313 |||||| || |||||||||||||| || ||||||||||| || ||||| |||||||| Sbjct 694 AGGTTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTT 635 Query 178314 CGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCT 178373 |||||| | |||||||||||||| || ||||||||||| ||||| | ||||||||||| Sbjct 634 CGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCT 575 Query 178374 CGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATT 178433 || || ||||| ||| ||||||| |||||||| ||| | ||| || || ||||| || Sbjct 574 AGCTGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTT 515 Query 178434 CAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTG-- 178491 |||||| |||||||||||||||||||| || | || | | ||| ||| ||| || Sbjct 514 CAACCTTAACGGTTTCAACTTCAACCAATCAGT--TGTAGACTCA---CAAGGTCGTGTA 460 Query 178492 ---AACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAG 178548 ||||| ||||||||| | ||||||||||| | ||||||||||| ||||||||| Sbjct 459 TTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAG 400 Query 178549 CGTAATGCTCACAACTTCCCTCTTGACCTCGCTGCT 178584 ||||| ||||||||||||||||| ||| | ||| || Sbjct 399 CGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCT 364 >seq3788 Length=5474 Score = 338 bits (374), Expect = 7e-88 Identities = 375/500 (75%), Gaps = 0/500 (0%) Strand=Plus/Minus Query 179352 CAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTG 179411 || || ||||| |||||||| || ||||| |||||||||||||||||||| ||| | | Sbjct 2740 CAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCTGGTGTTTTA 2681 Query 179412 GGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGAC 179471 || || || || | ||||| ||||| |||||||| ||||| |||||| | || ||||| Sbjct 2680 GGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTCGAAGAT 2621 Query 179472 AGTGACCAATCAAATACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCG 179531 ||||| | || || ||| || ||| | |||||||| | || || || || || Sbjct 2620 GGTGACGGTGCTAACACGTTCCGTGCCTTCAACCCTACACAGGCTGAAGAAACTTACTCA 2561 Query 179532 ATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGT 179591 ||||| || || |||||||||||||| || || |||||| | || ||| || |||||| Sbjct 2560 ATGGTAACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTCTCTAACAAGCGT 2501 Query 179592 TGGCTACATTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGT 179651 ||| |||| ||||| ||| | || ||||| || | ||| ||||||| | | ||| Sbjct 2500 TGGTTACACTTCTTCATGCTTTTAGTTCCCGTGACGGGGCTTTGGATGAGTGCTCTAGGT 2441 Query 179652 ATTATTGGTCTTGCACTTAACCTTAGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCG 179711 || ||||| | || ||||||||| | ||||||||||| || |||||||| ||| | || Sbjct 2440 GTTGTTGGTTTAGCTCTTAACCTTCGTGCTTATGACTTCGTATCACAAGAAATCCGTGCT 2381 Query 179712 GCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTA 179771 || || || ||||||||||| || |||||||| || |||||||| | || |||||| | Sbjct 2380 GCTGAAGACCCTGAGTTCGAAACTTTCTATACTAAAAACATCCTTCTTAACGAAGGTATC 2321 Query 179772 CGTGCTTGGATGGCACCAGTCGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTA 179831 |||||||||||||| | || ||||| || ||| | ||||| |||||||||||| Sbjct 2320 CGTGCTTGGATGGCTGCGCAAGACCAACCTCACGAACGTCTAGTATTCCCTGAAGAAGTA 2261 Query 179832 TTGCCAAGAGGCAACGCTCT 179851 || || | || |||||||| Sbjct 2260 TTACCGCGTGGTAACGCTCT 2241 Score = 255 bits (282), Expect = 7e-63 Identities = 361/505 (71%), Gaps = 2/505 (0%) Strand=Plus/Minus Query 178836 TGGTTTGATGTACTC-GATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTC 178894 |||||||||| || | ||||||||||| | || || ||||| ||||| |||||||| Sbjct 4502 TGGTTTGATG-ACGCTGATGACTGGCTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTC 4444 Query 178895 AGGTCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAAC 178954 |||| | | || |||||| ||||||| | ||||| || |||||| | || || ||||| Sbjct 4443 AGGTTTATTACTTTTCCCTTGTGCTTACTTTGCACTAGGTGGTTGGTTAACTGGTACAAC 4384 Query 178955 ATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTT 179014 ||||| || || |||||||| || || | ||| |||| || | || || ||||| || Sbjct 4383 TTTCGTAACATCATGGTATACACATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 4324 Query 179015 CCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATG 179074 | | ||||| ||||||||||| ||||| || | | | ||| || || || || | || Sbjct 4323 CTTAACTGCAGCTGTATCAACACCTGCAAACAGTATGGCACACTCTCTTCTATTTGTTTG 4264 Query 179075 GGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTT 179134 ||||||||||||||| || || ||| || ||| |||||||| || ||||| | || Sbjct 4263 GGGTCCAGAAGCTCAAGGTGACTTCACACGTTGGTGTCAACTTGGTGGTTTATGGGCATT 4204 Query 179135 TGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGC 179194 || || | |||||||| || | | || || || ||| | | ||||||||||| || Sbjct 4203 CGTAGCTTTACACGGTGCTTTTTCATTAATTGGCTTTATGTTAAGACAGTTTGAAATTGC 4144 Query 179195 ACGTCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTT 179254 ||| ||| | ||||| || || || || || || || | |||||| |||| || Sbjct 4143 TCGTTCAGTAAACTTACGTCCATATAACGCTATTGCTTTCTCAGCGCCAATTTCTGTATT 4084 Query 179255 TGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTT 179314 ||| ||||||| || || || || | || || || ||||||||||| || || Sbjct 4083 TGTTGCTGTTTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGCTT 4024 Query 179315 TGGAGTTGCAGCGATTTTCCGCTTC 179339 ||| || || || || ||||| ||| Sbjct 4023 TGGTGTAGCTGCAATCTTCCGTTTC 3999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596255843042400