Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq6015 769 0.0 seq3788 329 4e-85 >seq6015 Length=1491 Score = 769 bits (852), Expect = 0.0 Identities = 765/988 (77%), Gaps = 2/988 (0%) Strand=Plus/Minus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 || ||| | ||| | || || ||||| |||||| | || ||||||||||||| || | Sbjct 1350 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 1291 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| || || || | ||||| | ||||||||||| ||||||| |||||| Sbjct 1290 ATGATCCCTTGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCG 1231 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 || || |||||||| || ||||| || || || |||||||||| | || ||||||||| Sbjct 1230 CCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACAAC 1171 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 |||||| | |||||||| | || |||| ||||| || ||| | |||||||| || || Sbjct 1170 ATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAATT 1111 Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651 |||||||| || | ||| || || ||||| |||||||||||||||| |||||| | || Sbjct 1110 TGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCGTT 1051 Query 169652 TTCCACTTCCTCATCGGCATCTA-TGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCG 169710 | |||||||| | || | || |||| |||||||||||||||||||||| || | || Sbjct 1050 TGTCACTTCCTTTTAGGTGTATACTGCT-ACATGGGTCGTGAGTGGGAATTATCTTTCCG 992 Query 169711 TCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGC 169770 | | |||||||| || |||||| |||||||||||| ||||| || || ||||| ||| Sbjct 991 TTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGCGC 932 Query 169771 TGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTAT 169830 ||| ||| | || ||||| |||| ||||| || ||||| || | ||||||| | ||||| Sbjct 931 TGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGTAT 872 Query 169831 CTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCC 169890 | || || || |||| |||| | || ||||||||||||||||||||||| |||||||| Sbjct 871 CAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 812 Query 169891 CTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGG 169950 ||||||||| | |||||||| || || |||||||| || | || || |||||||| Sbjct 811 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGG 752 Query 169951 TAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGG 170010 | | || ||||| | |||||||||| || || ||||| || ||| | || Sbjct 751 TTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAGG 692 Query 170011 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGG 170070 |||| || |||||||||||||| || ||||||||||| || ||||||||||||||||| Sbjct 691 TTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTCGG 632 Query 170071 TCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGC 170130 ||| | ||||||||||||||||| ||||||||||| |||||| | ||||||||||| || Sbjct 631 TCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTAGC 572 Query 170131 AGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAA 170190 || ||||| ||| | || || |||||||| ||| | ||| | || || ||||| ||||| Sbjct 571 TGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTCAA 512 Query 170191 CCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACAC 170250 ||| |||||||||||||||||||| || | | || || |||||||| | ||||| Sbjct 511 CCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAACAC 452 Query 170251 CTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGC 170310 ||||||||| | ||||||||||| | || |||||||| |||||||||||||| || Sbjct 451 TTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGC 392 Query 170311 TCACAACTTCCCTCTCGACCTCGCTGCT 170338 ||||||||||||||| ||| | ||| || Sbjct 391 TCACAACTTCCCTCTAGACTTAGCTTCT 364 >seq3788 Length=5474 Score = 329 bits (364), Expect = 4e-85 Identities = 377/507 (74%), Gaps = 0/507 (0%) Strand=Plus/Minus Query 171108 CAAGGTTTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTC 171167 ||||||||||| |||||||||||||| ||||| || ||||||||||| || ||| | | Sbjct 2740 CAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCTGGTGTTTTA 2681 Query 171168 GGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGAT 171227 || ||||| || | | ||| ||||| |||| ||| ||||| || || || | |||||| Sbjct 2680 GGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTCGAAGAT 2621 Query 171228 GGTGATCAAGCAAACACCTTTAAGGCATTTGACACGACTCAGGAGGAAGAGACATATTCT 171287 ||||| || ||||| || || || || | || |||| ||||| || || || Sbjct 2620 GGTGACGGTGCTAACACGTTCCGTGCCTTCAACCCTACACAGGCTGAAGAAACTTACTCA 2561 Query 171288 ATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGT 171347 ||||| || || || ||||||||||| || ||||||||| | || ||| || |||||| Sbjct 2560 ATGGTAACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTCTCTAACAAGCGT 2501 Query 171348 TGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCAGTAGTCTGGGG 171407 ||||| || ||||| ||||| || ||||| || | ||| |||||| | ||| ||| || Sbjct 2500 TGGTTACACTTCTTCATGCTTTTAGTTCCCGTGACGGGGCTTTGGATGAGTGCTCTAGGT 2441 Query 171408 ATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGATTTCGTAAGTCAGGAGGTCAGAGCA 171467 || ||||| | |||||||| ||| | |||||||| |||||| || || || | || Sbjct 2440 GTTGTTGGTTTAGCTCTTAACCTTCGTGCTTATGACTTCGTATCACAAGAAATCCGTGCT 2381 Query 171468 GCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTT 171527 || ||||| || |||||||| || |||||||| || |||||||| | || |||||| | Sbjct 2380 GCTGAAGACCCTGAGTTCGAAACTTTCTATACTAAAAACATCCTTCTTAACGAAGGTATC 2321 Query 171528 CGTGCATGGATGGCACCAGTAGACCAACCACATGAAAACTTTGTGTTCCCAGAGGAAGTT 171587 ||||| |||||||| | ||||||||| || ||| | || ||||| || ||||| Sbjct 2320 CGTGCTTGGATGGCTGCGCAAGACCAACCTCACGAACGTCTAGTATTCCCTGAAGAAGTA 2261 Query 171588 CTACCTCGTGGCAATGCACTTTGATTT 171614 |||| ||||| || || || | |||| Sbjct 2260 TTACCGCGTGGTAACGCTCTATAATTT 2234 Score = 199 bits (220), Expect = 5e-46 Identities = 349/507 (69%), Gaps = 6/507 (1%) Strand=Plus/Minus Query 170592 TGGTTCGATGTCCTGGATGACTGGCTTAAACGT---GATCGGTTTGTATTTGTGGGCTGG 170648 ||||| |||| | ||||||||||| |||| || || || |||||||| || ||| Sbjct 4502 TGGTTTGATGACGCTGATGACTGGCT---ACGTCAAGACCGTTTCGTATTTGTAGGTTGG 4446 Query 170649 TCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACG 170708 || || | | ||||| || |||||| ||||| | || || ||| | || || || Sbjct 4445 TCAGGTTTATTACTTTTCCCTTGTGCTTACTTTGCACTAGGTGGTTGGTTAACTGGTACA 4386 Query 170709 ACATTTGTTACAAGTTGGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAAT 170768 || || || ||| ||||| || || || | || | ||| ||| | |||||| ||| Sbjct 4385 ACTTTCGTAACATCATGGTATACACATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAAC 4326 Query 170769 TTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT 170828 ||| | || || ||||| ||||| ||||| | ||||| || |||||||| | || Sbjct 4325 TTCTTAACTGCAGCTGTATCAACACCTGCAAACAGTATGGCACACTCTCTTCTATTTGTT 4266 Query 170829 TGGGGTCCTGAGTCTCAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAAT 170888 |||||||| || |||| || || ||| ||| |||| |||||||| || | ||| Sbjct 4265 TGGGGTCCAGAAGCTCAAGGTGACTTCACACGTTGGTGTCAACTTGGTGGTTTATGGGCA 4206 Query 170889 TTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATC 170948 || || || | ||||| || ||| | | || || || ||| | | ||||||||||| Sbjct 4205 TTCGTAGCTTTACACGGTGCTTTTTCATTAATTGGCTTTATGTTAAGACAGTTTGAAATT 4146 Query 170949 AGTCGTCTCGTAGGGATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTG 171008 |||| ||| | | || || || || || |||||||| | || || |||| Sbjct 4145 GCTCGTTCAGTAAACTTACGTCCATATAACGCTATTGCTTTCTCAGCGCCAATTTCTGTA 4086 Query 171009 TTTGTCAGCGTGTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCC 171068 ||||| || ||||| || || || | || || ||| |||||||||| || ||| | Sbjct 4085 TTTGTTGCTGTTTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGC 4026 Query 171069 TTTGGAGTTGCAGCAATCTTCCGCTTC 171095 ||||| || || ||||||||||| ||| Sbjct 4025 TTTGGTGTAGCTGCAATCTTCCGTTTC 3999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592147396912800