Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq222 118 2e-21 seq4034 107 4e-18 seq589 104 5e-17 seq1357 100 6e-16 seq1127 100 6e-16 seq367 100 6e-16 seq2126 95.1 3e-14 seq1593 89.7 1e-12 seq2489 86.0 1e-11 seq32 84.2 5e-11 >seq222 Length=84561 Score = 118 bits (130), Expect = 2e-21 Identities = 142/189 (75%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 210632 CGGTGA-TCAGGTCACCGTTGCGGGAGATTTGTGT-GCTCACCTTATTGCCAAATCCTAC 210689 |||||| | ||||| |||||||| ||| ||| | ||||||| ||| || | | Sbjct 63281 CGGTGAATGAGGTCGCCGTTGCGACTGATC-GTGCAGGTCACCTTCTTGTTGAAGTCACC 63339 Query 210690 GGAGCCATTGATCGTCTGTTGGATAGATTCAATGGCGAAGTTGGTGTAACGGCGGTATAC 210749 ||||| |||| | ||| | ||| || || ||||| |||||||||| |||||| || || Sbjct 63340 CGAGCCGTTGAACACCTGCTCGATGGACTCCATGGCAAAGTTGGTGTGACGGCGATACAC 63399 Query 210750 AGTCTTGAAGAAGGTAATTTGGGGGTTGCCGGTCAGGTACACGTCCTGAGCGCCATAAGC 210809 |||||| || || || ||||||||||| |||||||| | ||||||||| || ||||| Sbjct 63400 GACCTTGAAAAACGTGATCTGGGGGTTGCCAGTCAGGTAGATGTCCTGAGCACCGTAAGC 63459 Query 210810 TACGAGCTG 210818 ||||| || Sbjct 63460 GACGAGTTG 63468 >seq4034 Length=4767 Score = 107 bits (118), Expect = 4e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 282879 CGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTG 282938 |||||||| || ||||| || | |||||| || || |||||||||||||| || |||||| Sbjct 2003 CGCAGGCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGCTAGCGTG 1944 Query 282939 CGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 || |||||||| || || |||||||||||||| | || || ||||| Sbjct 1943 CGCCCATCCTCGAGCTGCTTCCCGGCAAAGATTAGCCGCTGCTGGTC 1897 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 ||| || |||||||| || || || || ||| | || || ||||| || | ||| ||||| Sbjct 1753 ACCTTCTTTGTCTTGAATTTTCGCCTTGACGTTCTCTATTGTGTCTGACGATTCCACTTC 1694 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||||||||| || || | |||||||||||||| ||||| Sbjct 1693 AAGAGTGATCGTCTTCCCGGTAAGGGTCTTAACGAATATTTGCAT 1649 >seq589 Length=52745 Score = 104 bits (114), Expect = 5e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 282879 CGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTG 282938 |||||||| || ||||| |||| |||||| || || |||||||||||||| || |||||| Sbjct 25598 CGCAGGCGCAGCACCAGGTGTAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGCGAGCGTG 25539 Query 282939 CGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 || || ||||| ||||| || || |||||||| | || || ||||| Sbjct 25538 CGCCCGTCCTCGAGTTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTC 25492 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 ||| || ||||| ||||| || || || || | || || |||||||| | || ||||| Sbjct 25357 ACCTTCTTTGTCCTGGATTTTCGCCTTGACATTTTCTATCGTGTCCGACGACTCCACTTC 25298 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| |||||||| ||||||| ||||| |||||||||||||| Sbjct 25297 AAGAGTAATCGTCTTTCCCGTCAGCGTCTTCACGAATATCTGCAT 25253 >seq1357 Length=27981 Score = 100 bits (110), Expect = 6e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 |||||||||||| |||||||| || || || | ||||| |||||||| | || || || Sbjct 4329 ACCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATGGTGTCCGACGACTCCACCTC 4388 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||||||||| ||||| | ||||| || ||||||||||| Sbjct 4389 GAGGGTGATCGTCTTGCCCGTGAGGGTCTTCACAAATATCTGCAT 4433 >seq1127 Length=32976 Score = 100 bits (110), Expect = 6e-16 Identities = 94/119 (79%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 282983 GTCACCCGGAA--TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCC 283040 || || ||||| ||||||||||||| |||||||| || || || | ||||| |||||| Sbjct 593 GTGACGCGGAACTTACCCTCCTTGTCCTGGATCTTCGCCTTAACATTCTCGATGGTGTCC 652 Query 283041 GAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || || ||||| ||||| ||||| ||||| | ||||| ||||| |||||||| Sbjct 653 GAGGACTCCACCTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCAT 711 >seq367 Length=69066 Score = 100 bits (110), Expect = 6e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || ||||| || | ||||| || || || |||||||||||||| Sbjct 68806 CCACCGCGCAGGCGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGCC 68865 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 || |||||||| ||||| || || || ||||| ||||||| || || ||||| Sbjct 68866 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 68918 >seq2126 Length=15993 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 |||||||||||| || ||||| || || || | ||||| |||||||| | || || || Sbjct 624 ACCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAGGACTCCACCTC 683 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||| ||||| ||||||| ||||| ||||| |||||||| Sbjct 684 GAGCGTGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 728 >seq1593 Length=23154 Score = 89.7 bits (98), Expect = 1e-12 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 317040 CAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCA 317099 || ||| ||||| |||| || | ||| || ||||||||||| | || ||||||||||| Sbjct 13414 CACCTGGCCGTTGGCAATGGCACGCATGAGCGTCGACTTGCCCACGCCGTTGGGGCCGCA 13473 Query 317100 AAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACC 317159 || || || || || |||||| | || |||||| || |||||||| | Sbjct 13474 CAGGCCGTAGCGGCGGCCACGCTTCAGGCGCAGCGCGGCGTTGTTGAGCAGAATCTTGGC 13533 Query 317160 ACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCGCC 317201 ||| || ||||| |||||||| || | ||||| |||||||| Sbjct 13534 ACCGTACGCCAGCGAGAACTCGCAGTTGCACAGCTCCTCGCC 13575 >seq2489 Length=12514 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 273773 CAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACC 273832 |||| |||| ||||||| | || || ||| ||| ||||| || |||| | | || Sbjct 7516 CAGTCGCGTGTAAATGTAACGCGCGCTGGCAGCGTCTTTGCCGCCCTGCAAACGTGTGCC 7457 Query 273833 AAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCAT 273892 |||||||| ||| | ||| ||| ||||||||||| || || | ||||| |||| Sbjct 7456 GAACTGACCGCTGGGATGCAGCAGGTTGATGTTGTTGCTGCCCACAAATTCCTGTGCCAG 7397 Query 273893 ATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGAT 273952 || || || | | ||| |||||| ||||||||||||||||||||||| | Sbjct 7396 GTTGACAATGGCGCTAGCCAGGCTCTGCTCGCCATGGTGATAGGCGCTGTGTTCGGCCAC 7337 Query 273953 ATAACCACTGAACTGAGCAACCTTCAC 273979 ||| | | ||| ||||||| ||| Sbjct 7336 ATATGCGGACAGCTGGGCAACCTGCAC 7310 >seq32 Length=161680 Score = 84.2 bits (92), Expect = 5e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || ||||||||||| || | ||||||| ||| || ||||| ||||| ||||| | | Sbjct 59289 CTCATCGGCATGAACGCGCAGCTCATGGAGCAGTACATCGAGTTCGTCGCTGACAGGCTC 59230 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 | ||| || || | ||||| || | || || || || |||| | ||||| Sbjct 59229 CTGGTGTGCCTTGGCAATGAGAAGGTCTTCCACACCGCCAATCCTTTCGACTGGATGGAA 59170 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGT 230386 ||||| || |||||||| || || ||||||||||| ||||| || Sbjct 59169 CTCATCTCTCTCCAGGGAAAGACAAACTTCTTCGAGAAGCGCGT 59126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046646795826060