Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq4034 104 2e-17 seq589 104 2e-17 seq367 96.9 2e-15 seq2126 86.0 5e-12 seq1127 82.4 5e-11 >seq4034 Length=4767 Score = 104 bits (114), Expect = 2e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 44119 CAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCG 44178 ||| | || ||||||||| |||||||||||||| ||||||||||| || || || ||| Sbjct 2001 CAGGCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGCTAGCGTGCG 1942 Query 44179 CTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 | | || || |||||||||||||||||||| | |||||||| || Sbjct 1941 CCCATCCTCGAGCTGCTTCCCGGCAAAGATTAGCCGCTGCTGGTC 1897 >seq589 Length=52745 Score = 104 bits (114), Expect = 2e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 44119 CAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCG 44178 ||| | || ||||||||| |||||||||||||| ||||||||||| |||||||| ||| Sbjct 25596 CAGGCGCAGCACCAGGTGTAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCG 25537 Query 44179 CTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 | |||| || || ||||| || |||||||| | |||||||| || Sbjct 25536 CCCGTCCTCGAGTTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTC 25492 >seq367 Length=69066 Score = 96.9 bits (106), Expect = 2e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| || ||||||||||| || |||||||| || || Sbjct 68806 CCACCGCGCAGGCGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGCC 68865 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || ||| |||| ||||||||||| ||||| ||||||| |||||||| || Sbjct 68866 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 68918 >seq2126 Length=15993 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCA 44288 || |||| ||||| ||| ||||| ||||| | | |||||||| | ||| |||| Sbjct 620 GCTCACCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAGGACTCCA 679 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||| | ||| || ||||| ||||| ||||||||||||||||| |||||| Sbjct 680 CCTCGAGCGTGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 729 >seq1127 Length=32976 Score = 82.4 bits (90), Expect = 5e-11 Identities = 84/107 (79%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 44233 ACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCT 44291 ||| ||||| ||| |||||| ||| || ||| | |||||||| | ||| ||||||| Sbjct 607 ACCCTCCTTGTCCTGGATCTTCGCCTT-AACATTCTCGATGGTGTCCGAGGACTCCACCT 665 Query 44292 CCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | | ||| || ||||| |||||||||||||| ||||| || |||||| Sbjct 666 CGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATG 712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359960170931130