Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4034 84.2 5e-11 seq2126 84.2 5e-11 seq1357 84.2 5e-11 seq1127 84.2 5e-11 >seq4034 Length=4767 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || || |||||||| || || |||||| |||||| Sbjct 1652 CAAATATTCGTTAAGACCCTTACCGGGAAGACGATCACTCTTGAAGTGGAATCGTCAGAC 1711 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 || || ||||||||||| || ||||| ||||||||||| Sbjct 1712 ACAATAGAGAACGTCAAGGCGAAAATTCAAGACAAAGAAGG 1752 >seq2126 Length=15993 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||||| ||||||||||| ||| ||| Sbjct 725 CAGATCTTCGTGAAGACCCTGACGGGCAAGACTATCACGCTCGAGGTGGAGTCCTCGGAC 666 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||||||| || || |||||||||||||| || || Sbjct 665 ACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGG 625 >seq1357 Length=27981 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || ||||| || || |||||||||||||||||||| || ||| Sbjct 4430 CAGATATTTGTGAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTGGAGTCGTCGGAC 4371 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||||||| || || ||||| |||||||| || || Sbjct 4370 ACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGG 4330 >seq1127 Length=32976 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || || ||||| ||||||||||| ||| ||| Sbjct 708 CAGATTTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGAGGTGGAGTCCTCGGAC 649 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||||||| || || ||||| |||||||| || || Sbjct 648 ACCATCGAGAATGTTAAGGCGAAGATCCAGGACAAGGAGGG 608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203624936866660