Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq367 136 4e-27 seq4034 114 1e-20 seq589 114 1e-20 seq1357 95.1 1e-14 seq678 93.3 4e-14 >seq367 Length=69066 Score = 136 bits (150), Expect = 4e-27 Identities = 105/125 (84%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||||| ||||| |||||||||||||||||||| ||||| | Sbjct 68805 GCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGC 68864 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||||||||| ||||||||||| ||||||| ||| Sbjct 68865 CAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 68924 Query 41755 AACGC 41759 || || Sbjct 68925 AATGC 68929 >seq4034 Length=4767 Score = 114 bits (126), Expect = 1e-20 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 41642 CGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTG 41701 || || || | |||||| |||||||||||||||||||| ||||| ||||| | || ||| Sbjct 2003 CGCAGGCGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGCTAGCGTG 1944 Query 41702 CGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGC 41759 ||| | || ||||||||||| ||||| || || || ||||| ||||||| ||||| || Sbjct 1943 CGCCCATCCTCGAGCTGCTTCCCGGCAAAGATTAGCCGCTGCTGGTCCGGGGGAATGC 1886 >seq589 Length=52745 Score = 114 bits (126), Expect = 1e-20 Identities = 93/113 (82%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 41642 CGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTG 41701 || || || | |||||| || ||||||||||||||||| ||||| ||||||| ||| ||| Sbjct 25598 CGCAGGCGCAGCACCAGGTGTAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGCGAGCGTG 25539 Query 41702 CGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| |||| ||||| |||||||| || || || || ||||| ||||||| ||| Sbjct 25538 CGCCCGTCCTCGAGTTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCCGGGGG 25486 >seq1357 Length=27981 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||||||||| ||||| | ||||||||| |||| || ||||||||||| ||||| | Sbjct 4168 CCTTCTGAATGTTGTAGTCAGCAAGGGTGCGCCCGTCCTCCAGCTGCTTGCCCGCGAAGA 4227 Query 41733 TCAGGCGCTGTTGGTCCGCGGG 41754 | |||||||| ||||||| ||| Sbjct 4228 TGAGGCGCTGCTGGTCCGGGGG 4249 >seq678 Length=48865 Score = 93.3 bits (102), Expect = 4e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 41660 TGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGC 41719 |||||||||||| | |||| ||||| ||||||| ||||||| |||| || |||||| Sbjct 42535 TGCAGCGTGCTCCCGCTCTGGATGTTGTAGTCGGCCAGGGTGCAGCCGTCCTCAAGCTGC 42594 Query 41720 TTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 |||||||| || || || ||||| ||||| || |||| | ||| ||||| Sbjct 42595 TTGCCGGCAAAGATAAGCCGCTGCTGGTCGGCCGGAATGGCCTCTCTGTCC 42645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462264184068000