Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq115 143 6e-29 seq123 96.9 7e-15 seq100 86.0 1e-11 seq35 86.0 1e-11 >seq115 Length=3126412 Score = 143 bits (158), Expect = 6e-29 Identities = 136/174 (78%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 319857 GGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCC 319916 |||||| || || |||||||| || |||| |||||||||||||| || || || || || Sbjct 977015 GGGGAAGCCGTCCAGCTGGCCATTGGCAATGGCGCGCATCAGGGTCGACTTGCCGGCGCC 977074 Query 319917 GTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAG 319976 ||| || || ||||| |||||||| | ||||| ||||||| | |||| ||||||||| Sbjct 977075 GTTGGGGCCGCACAGGCCGTAGCGCTGGCCGCGCTTCAGGTGCAGGCGCGCGTTGTTCAG 977134 Query 319977 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030 || || || |||||||| ||||| || || || || | ||||| |||||||| Sbjct 977135 CAGGATCTTGCCACCATAGGCCAGGGAGAACTCGCAGTTGCACAGGTCCTCACC 977188 Score = 118 bits (130), Expect = 2e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 318981 GTCAAGGGTCTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGT 319040 ||| |||| ||| ||| || |||| ||| |||||||| ||||| ||||||||||| || Sbjct 975088 GTCCAGGGACTCGCGGTCCTCGCCGGTGGCGTAACGCCACTGGATGTACTGGTTGGGGGT 975147 Query 319041 CATGTCAAGATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCAT 319100 |||||| || || | ||| ||||||||||| || ||||| |||||||| || | |||| Sbjct 975148 CATGTCCAGGTGGTTCTCAATGTGGTGGAACGCGTGCTGCGCCACGTACGCGACGCGCAG 975207 Query 319101 ATTTGGATGCTTCCAAAC 319118 || || |||||||| || Sbjct 975208 GTTGGGGTGCTTCCACAC 975225 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 320401 TTCGCCATGTTCCTGATGATAACACATGTCTTACGCCGAACGGGGGTGGTGCGATCGGCA 320460 || |||||||| | |||||| || || | |||||| || | |||||||||||| |||| Sbjct 978296 TTGGCCATGTTGCGGATGATCACGCAGGCCTTACGGCGGATGGGGGTGGTGCGGTCGGTC 978355 Query 320461 AGCCCGCGGACGAGTAGCGGGGTCAGGATAGACAGGGTCTTCGCGTCAACCGACTG 320516 || ||||| || || || || |||||| |||||||| ||| || |||||||| Sbjct 978356 AGACCGCGCACCAGCAGGGGCACCAGGATGGACAGGGTGCGCGCATCCACCGACTG 978411 Score = 84.2 bits (92), Expect = 5e-11 Identities = 114/158 (72%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 318790 CCATACTCCTCCAGGCGTTCGCGGGACATCCATTGGGTAGTCTCATCGTTTTTCCACTGA 318849 |||| |||||| ||||| |||||||||| ||| ||| | | ||| |||||||| Sbjct 974719 CCAT-CTCCTCGAGGCGGTCGCGGGACAGCCAGGAGGTCTCCGCCTCGCCCTTCCACTGC 974777 Query 318850 ACCTCGTACTCGTAAGATTTTTTCAGCTTGCGGCGACCAAGAATCTTGTCAAGAATTTTC 318909 |||||||||||||| ||| |||||||||| || || | ||| |||| | | Sbjct 974778 ACCTCGTACTCGTAGCCGCGCTTCTGCTTGCGGCGGCCCAGCAGCTTCTCAACCACGCGC 974837 Query 318910 TTCACTCCGTCAACGACTTTAGTGTCATACATCTTCTT 318947 ||||| ||||| || || || ||| |||||||||| Sbjct 974838 TTCACGCCGTCCACCACCTTGACCTCAGACATCTTCTT 974875 >seq123 Length=4192086 Score = 96.9 bits (106), Expect = 7e-15 Identities = 76/90 (84%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 165598 ACACTCGCCATAGCTCAGTTGGAAGAGCACCGGACTGTAAATGAAAACACATTAATCCGT 165657 |||||| ||||||||||||||||||||| ||||||||| | ||| ||| ||| | Sbjct 3385992 ACACTCACCATAGCTCAGTTGGAAGAGCGAAGGACTGTAATGCACAACTTGTTA-TCCTT 3386050 Query 165658 AGGTCCCCCGTTCGAACCGGGGTGGCGAGA 165687 ||||||||||||||||||||||||| |||| Sbjct 3386051 AGGTCCCCCGTTCGAACCGGGGTGGTGAGA 3386080 >seq100 Length=2003218 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 17287 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 17228 Query 165770 CCCAC 165774 ||||| Sbjct 17227 CCCAC 17223 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 54195 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 54254 Query 165770 CCCAC 165774 ||||| Sbjct 54255 CCCAC 54259 >seq35 Length=2876677 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 513199 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 513258 Query 165770 CCCAC 165774 ||||| Sbjct 513259 CCCAC 513263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057821831460800