Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq112 136 4e-27 seq138 127 2e-24 seq35 120 3e-22 seq117 104 2e-17 seq32 95.1 1e-14 seq14 87.8 2e-12 >seq112 Length=2452761 Score = 136 bits (150), Expect = 4e-27 Identities = 111/135 (82%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| ||| | |||||||| || ||||||| ||||||||| |||||||| Sbjct 1009713 GACAAGGAGGGCATTCCCCCCGACCAGCAGCGCCTCATCTTCGCGGGCAAGCAGCTGGAG 1009654 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| || || ||| |||||| ||||||||||||||| |||| ||||| || ||| || Sbjct 1009653 GACGGCCGTACGCTCGCCGACTATAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 1009594 Query 40903 CGCTTGAGGGGCGGC 40917 ||| || | |||||| Sbjct 1009593 CGCCTGCGCGGCGGC 1009579 Score = 132 bits (146), Expect = 5e-26 Identities = 105/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || ||||||| ||||||||| |||||||| |||| || Sbjct 1012374 GGCATCCCCCCCGACCAGCAGCGCCTCATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGT 1012315 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 |||||| |||||| ||||||||||||||| |||| ||||| || ||| ||||| || | Sbjct 1012314 ACCCTCGCCGACTATAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGC 1012255 Query 40912 GGCGGC 40917 |||||| Sbjct 1012254 GGCGGC 1012249 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 |||||||||||||||||| | |||||||| || ||||||| ||||||||| |||||||| Sbjct 1011026 GACAAAGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCGGGCAAGCAGCTGGAG 1010967 Query 40843 GACG 40846 |||| Sbjct 1010966 GACG 1010963 >seq138 Length=2592956 Score = 127 bits (140), Expect = 2e-24 Identities = 109/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||||||||| | |||||||| || ||||||| ||||||||| |||||||| Sbjct 406224 GACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTCATCTTCGCGGGCAAGCAGCTGGAG 406283 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| || ||| | ||| || ||||| ||||||||| |||||||||| || ||| || Sbjct 406284 GACGGCCGGACCTTGGCCGATTATAACATTCAGAAGGAGTCCACGCTGCACCTGGTGCTG 406343 Query 40903 CGCTTGAGGGGCGGC 40917 ||| || | |||||| Sbjct 406344 CGCCTGCGCGGCGGC 406358 >seq35 Length=2876677 Score = 120 bits (132), Expect = 3e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 2472592 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 2472651 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||||||||||||| | |||||||| || ||| ||||| || | Sbjct 2472652 ACGCTGGCTGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGC 2472711 Query 40912 GGCGGC 40917 |||||| Sbjct 2472712 GGCGGC 2472717 >seq117 Length=2441637 Score = 104 bits (114), Expect = 2e-17 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||||||||| | |||||||| || ||||||| |||||||| |||||||| Sbjct 1798936 GACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAG 1798877 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 |||| ||||| || |||||||||||||||||||| Sbjct 1798876 GACGGCCGCACGCTGGCCGACTACAACATCCAGAAGG 1798840 >seq32 Length=3221238 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 117035 GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCC 117094 ||||| ||||||||||| ||| ||| |||||| ||||||| || ||| ||| | || Sbjct 1864688 GAGCGGCTGGTGGCCTTTGCGTGCGTGGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCC 1864629 Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGG 117129 || || ||||||||||| ||||||||||||||||| Sbjct 1864628 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1864594 >seq14 Length=1676047 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| | |||||||| || ||||||| |||||||| |||||||| || | ||| Sbjct 503371 GGCATCCCGCCCGACCAGCAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGC 503312 Query 40852 ACCCTCAACGACTACAACATCCAGAAGG 40879 ||||| ||||||||||||||||||| Sbjct 503311 ACCCTGGCGGACTACAACATCCAGAAGG 503284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218169561600