Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq115 96.9 5e-16 seq122 93.3 7e-15 seq22 91.5 2e-14 >seq115 Length=3126412 Score = 96.9 bits (106), Expect = 5e-16 Identities = 167/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 1164277 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCTGCCAT 1164218 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| || || | |||| || |||| Sbjct 1164217 CCGCCGCCTGGCACGCCGCGGCGGCGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGAC 1164158 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| | | || ||| | ||| ||||| Sbjct 1164157 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGGTGCGCGACGCTGTGACCTACACCGA 1164098 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| |||||||| |||||| || | || | || || || | || || || || Sbjct 1164097 GCACGCCCGCCGTAAGACCGTCACCGCCTTTGACGTGGTGTACGCGCTCAAGCGCCAGGG 1164038 Query 16672 CCG 16674 ||| Sbjct 1164037 CCG 1164035 Score = 91.5 bits (100), Expect = 2e-14 Identities = 166/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 1289641 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 1289700 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| || || | |||| || |||| Sbjct 1289701 CCGCCGCCTGGCACGCCGCGGCGGCGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGAC 1289760 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| | | || || | ||| ||||| Sbjct 1289761 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGGTGCGCGACGCCGTGACCTACACCGA 1289820 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| |||||||| |||||| || | || | || || || | || || || || Sbjct 1289821 GCACGCCCGCCGTAAGACCGTCACCGCCTTTGACGTGGTGTACGCGCTCAAGCGCCAGGG 1289880 Query 16672 CCG 16674 ||| Sbjct 1289881 CCG 1289883 Score = 91.5 bits (100), Expect = 2e-14 Identities = 166/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 1366770 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 1366711 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| || || | |||| || |||| Sbjct 1366710 CCGCCGCCTGGCACGCCGCGGCGGCGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGAC 1366651 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| | | || || | ||| ||||| Sbjct 1366650 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGGTGCGCGACGCCGTGACCTACACCGA 1366591 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| |||||||| |||||| || | || | || || || | || || || || Sbjct 1366590 GCACGCCCGCCGTAAGACCGTCACCGCCTTTGACGTGGTGTACGCGCTCAAGCGCCAGGG 1366531 Query 16672 CCG 16674 ||| Sbjct 1366530 CCG 1366528 Score = 87.8 bits (96), Expect = 3e-13 Identities = 165/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 1086703 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 1086762 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| || || | |||| || |||| Sbjct 1086763 CCGCCGCCTGGCGCGCCGCGGCGGCGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGAC 1086822 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| | | || || | ||| ||||| Sbjct 1086823 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGGTGCGCGACGCCGTGACCTACACCGA 1086882 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| || | || | || || || | || || || || Sbjct 1086883 GCACGCCCGCCGCAAGACCGTCACCGCCTTTGACGTGGTGTACGCGCTCAAGCGCCAGGG 1086942 Query 16672 CCG 16674 ||| Sbjct 1086943 CCG 1086945 Score = 87.8 bits (96), Expect = 3e-13 Identities = 165/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 1509181 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 1509240 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| || || | |||| || |||| Sbjct 1509241 CCGCCGCCTGGCGCGCCGCGGCGGCGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGAC 1509300 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| | | || || | ||| ||||| Sbjct 1509301 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGGTGCGCGACGCCGTGACCTACACCGA 1509360 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| || | || | || || || | || || || || Sbjct 1509361 GCACGCCCGCCGCAAGACCGTCACCGCCTTTGACGTGGTGTACGCGCTCAAGCGCCAGGG 1509420 Query 16672 CCG 16674 ||| Sbjct 1509421 CCG 1509423 Score = 87.8 bits (96), Expect = 3e-13 Identities = 165/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 1813968 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 1813909 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| || || | |||| || |||| Sbjct 1813908 CCGCCGCCTGGCGCGCCGCGGCGGCGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGAC 1813849 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| | | || || | ||| ||||| Sbjct 1813848 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGGTGCGCGACGCCGTGACCTACACCGA 1813789 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| || | || | || || || | || || || || Sbjct 1813788 GCACGCCCGCCGCAAGACCGTCACCGCCTTTGACGTGGTGTACGCGCTCAAGCGCCAGGG 1813729 Query 16672 CCG 16674 ||| Sbjct 1813728 CCG 1813726 >seq122 Length=820018 Score = 93.3 bits (102), Expect = 7e-15 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||| || || || Sbjct 616116 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGCCTGGCGCGCCGCGGC 616057 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| || || || |||| || |||| || | || | ||| | ||| Sbjct 616056 GGCGTCAAGCGCATCAGCGGCCTGATCTACGAGGAGACGCGCGGCGTGCTCAAGGTGTTC 615997 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| | | || || | ||| ||||||||||| || ||||| ||| Sbjct 615996 CTGGAGAACGTGGTGCGCGACGCCGTGACCTACACCGAGCACGCCCGCCGCAAGACCGTC 615937 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| || | || | ||||| || | || || || ||||| Sbjct 615936 ACCGCCTTTGACGTGGTCTACGCGCTCAAGCGCCAGGGCCG 615896 Score = 93.3 bits (102), Expect = 7e-15 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||| || || || Sbjct 631533 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGCCTGGCGCGCCGCGGC 631592 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| || || || |||| || |||| || | || | ||| | ||| Sbjct 631593 GGCGTCAAGCGCATCAGCGGCCTGATCTACGAGGAGACGCGCGGCGTGCTCAAGGTGTTC 631652 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| | | || || | ||| ||||||||||| || ||||| ||| Sbjct 631653 CTGGAGAACGTGGTGCGCGACGCCGTGACCTACACCGAGCACGCCCGCCGCAAGACCGTC 631712 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| || | || | ||||| || | || || || ||||| Sbjct 631713 ACCGCCTTTGACGTGGTCTACGCGCTCAAGCGCCAGGGCCG 631753 >seq22 Length=1310629 Score = 91.5 bits (100), Expect = 2e-14 Identities = 166/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 825924 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 825865 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || ||||| |||||||| || || | |||| || |||| Sbjct 825864 CCGCCGCCTGGCGCGCCGCGGTGGCGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGAC 825805 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| | | || || | ||| ||||| Sbjct 825804 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGGTGCGCGACGCCGTGACCTACACCGA 825745 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| || | || | || || || | || || || || Sbjct 825744 GCACGCCCGCCGCAAGACCGTCACCGCCTTTGACGTGGTGTACGCGCTCAAGCGCCAGGG 825685 Query 16672 CCG 16674 ||| Sbjct 825684 CCG 825682 Score = 87.8 bits (96), Expect = 3e-13 Identities = 165/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 530939 CGCCAAGCGCCACCGCAAGGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCCGCCAT 530880 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| || || | |||| || |||| Sbjct 530879 CCGCCGCCTGGCGCGCCGCGGCGGCGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGAC 530820 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| | | || || | ||| ||||| Sbjct 530819 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGGTGCGCGACGCAGTGACCTACACCGA 530760 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| || | || | || || || | || || || || Sbjct 530759 GCACGCCCGCCGCAAGACCGTCACCGCCTTTGACGTGGTGTACGCGCTCAAGCGCCAGGG 530700 Query 16672 CCG 16674 ||| Sbjct 530699 CCG 530697 Score = 87.8 bits (96), Expect = 3e-13 Identities = 165/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 605104 CGCCAAGCGCCACCGCAAGGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCCGCCAT 605045 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| || || | |||| || |||| Sbjct 605044 CCGCCGCCTGGCGCGCCGCGGCGGCGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGAC 604985 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| | | || || | ||| ||||| Sbjct 604984 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGGTGCGCGACGCAGTGACCTACACCGA 604925 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| || | || | || || || | || || || || Sbjct 604924 GCACGCCCGCCGCAAGACCGTCACCGCCTTTGACGTGGTGTACGCGCTCAAGCGCCAGGG 604865 Query 16672 CCG 16674 ||| Sbjct 604864 CCG 604862 Score = 87.8 bits (96), Expect = 3e-13 Identities = 165/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 652408 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 652467 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| || || | |||| || |||| Sbjct 652468 CCGCCGCCTGGCGCGCCGCGGCGGCGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGAC 652527 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| | | || || | ||| ||||| Sbjct 652528 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGGTGCGCGACGCAGTGACCTACACCGA 652587 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| || | || | || || || | || || || || Sbjct 652588 GCACGCCCGCCGCAAGACCGTCACCGCCTTTGACGTGGTGTACGCGCTCAAGCGCCAGGG 652647 Query 16672 CCG 16674 ||| Sbjct 652648 CCG 652650 Score = 87.8 bits (96), Expect = 3e-13 Identities = 165/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 842950 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 843009 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| || || | |||| || |||| Sbjct 843010 CCGCCGCCTGGCGCGCCGCGGCGGCGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGAC 843069 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| | | || || | ||| ||||| Sbjct 843070 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGGTGCGCGACGCAGTGACCTACACCGA 843129 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| || | || | || || || | || || || || Sbjct 843130 GCACGCCCGCCGCAAGACCGTCACCGCCTTTGACGTGGTGTACGCGCTCAAGCGCCAGGG 843189 Query 16672 CCG 16674 ||| Sbjct 843190 CCG 843192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075053710880