Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq148 728 0.0 >seq148 Length=122497 Score = 728 bits (806), Expect = 0.0 Identities = 728/942 (77%), Gaps = 2/942 (0%) Strand=Plus/Minus Query 211612 GGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTT-ATCGT 211670 |||||||||||||| | |||||||| |||| || ||||||| | || ||| || | Sbjct 78844 GGTTGGTTTGGTGTATTAATGATCCCTACTCTTTTAACTGCAACTTC-TGTTTTCATTAT 78786 Query 211671 AGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTC 211730 || || ||||| || ||||| ||||||||||| || |||||||| || ||| ||||||| Sbjct 78785 CGCGTTTATCGCGGCTCCTCCTGTTGATATCGATGGTATCCGTGAGCCTGTATCTGGTTC 78726 Query 211731 ATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGG 211790 ||| | || || |||||||||||| |||||||| || |||| | || ||||| ||||| Sbjct 78725 ATTATTATACGGAAACAACATCATCACTGGTGCAATTATTCCTACATCTAACGCTATCGG 78666 Query 211791 TTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGG 211850 |||||||||||| || || |||||||| ||| || | ||||||||| | ||||| ||||| Sbjct 78665 TTTACACTTCTACCCAATTTGGGAAGCTGCATCTTTAGATGAGTGGTTATACAACGGTGG 78606 Query 211851 TCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACA 211910 ||||||||| | | | | |||||| | | || | | | |||||||| | | Sbjct 78605 TCCTTACCAACTTATCGTTTGTCACTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGA 78546 Query 211911 GTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACC 211970 |||||| | || | |||||||||||||||||| |||||| |||||||| |||||||| Sbjct 78545 ATGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCAGTTGCTTACTCAGCACC 78486 Query 211971 TGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGA 212030 || | |||||| ||||||||| || | |||||| ||||||| ||||| ||||| || Sbjct 78485 AGTTGCTGCAGCTACAGCTGTATTCATTATCTACCCACTCGGTCAAGGTTCTTTCTCTGA 78426 Query 212031 CGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACA 212090 |||||||||||||||||| ||||| || |||||||||||| ||||||||||||| || || Sbjct 78425 CGGTATGCCTTTAGGTATCTCAGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCA 78366 Query 212091 TAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATT 212150 ||||| ||||||||||||||||| ||| ||||| || ||| | || ||||| |||| Sbjct 78365 CAACATTCTTATGCACCCATTCCACATGCTTGGTGTAGCTGGTGTATTTGGTGGTTCATT 78306 Query 212151 ATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTT 212210 ||||||||| ||||||||||| ||||| || ||||| | || |||||||| |||| Sbjct 78305 ATTCTCTGCAATGCACGGTTCACTTGTAACTTCTTCTTTAATTCGTGAAACTACTGAAAA 78246 Query 212211 AGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGC 212270 || ||| ||| | |||||||| ||||| ||||||||||| || || ||||||||||| Sbjct 78245 CGAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGC 78186 Query 212271 TGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAG 212330 || ||||| ||||||||| | | || ||||| ||||| |||||||||||| | Sbjct 78185 AGCTCATGGCTACTTCGGTCGTTTAATTTTCCAATATGCTTCATTCAACAACTCTCGTTC 78126 Query 212331 TTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTAT 212390 |||||||||||| | || | ||||| ||| | || | ||||| || || | ||||| Sbjct 78125 ATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTAT 78066 Query 212391 CTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATC 212450 | || |||||||||||| ||||||| ||||||||||||||||||||||| ||| || Sbjct 78065 TTCAACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACA 78006 Query 212451 AGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGT 212510 |||| || | ||||||| || || | ||| | || ||| | ||||||||||| Sbjct 78005 AGGTCGTGTAATCAACACTTGGGCAGACATTATCAACCGTGCTAACTTAGGTATGGAAGT 77946 Query 212511 TATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 |||||||| | || || |||||||||||| | || ||||| Sbjct 77945 AATGCACGAGCGTAACGCTCACAACTTCCCATTAGATTTAGC 77904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807553584889600