Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq148 713 0.0 >seq148 Length=122497 Score = 713 bits (790), Expect = 0.0 Identities = 754/988 (76%), Gaps = 10/988 (1%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 ||||||||||||||||| |||||| || || | ||| | |||||||||||||| ||| Sbjct 78886 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 78827 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 170785 |||||||| |||| ||||||| || || ||||||| | || || ||||| |||||| Sbjct 78826 ATGATCCCTACTCTTTTAACTGCAACTTCTGTTTTCATTATCGCGTTTATCGCGGCTCCT 78767 Query 170786 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 170845 || || |||||||| || ||| | || || || | ||||| || ||||| || |||||| Sbjct 78766 CCTGTTGATATCGATGGTATCCGTGAGCCTGTATCTGGTTCATTATTATACGGAAACAAC 78707 Query 170846 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 170905 |||||| ||||||| | |||| | || ||||| || || ||||||||||| || || Sbjct 78706 ATCATCACTGGTGCAATTATTCCTACATCTAACGCTATCGGTTTACACTTCTACCCAATT 78647 Query 170906 TGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATT 170965 |||||||| || || | || |||||||| |||||||| ||||||||||| | | || Sbjct 78646 TGGGAAGCTGCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTT 78587 Query 170966 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 171025 | |||||| | | || | | | | ||||||||| | | |||||| |||| | | | Sbjct 78586 TGTCACTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAATGGGAATTATCTTTCCGT 78527 Query 171026 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCA 171085 |||| ||| | || ||||| || || ||||||||||| || ||||||| || Sbjct 78526 TTAGGTATGCGTCCATGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGCT 78467 Query 171086 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 171145 |||||| || | || ||| ||||||| ||||| |||||||| |||||||| |||||||| Sbjct 78466 GTATTCATTATCTACCCACTCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATC 78407 Query 171146 TCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCC 171205 |||||||| |||||||||||| |||| |||||||| || |||||||| || |||||||| Sbjct 78406 TCAGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTCTTATGCACCCA 78347 Query 171206 TTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGT 171265 ||||| ||| |||||||| ||| | || |||||| | ||| ||||||||||||| Sbjct 78346 TTCCACATGCTTGGTGTAGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGGT 78287 Query 171266 TCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAA--AACTACG 171323 || || || || |||||| |||| | || || ||||| ||||| ||| ||| | | Sbjct 78286 TCACTTGTAACTTCTTCTTTAATTCGTGAAACTACTGAAAACGAA--TCAGCTAACGAAG 78229 Query 171324 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 171383 | || || ||||| |||||||||||||| || ||||| ||||| |||||||| ||||||| Sbjct 78228 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTTCG 78169 Query 171384 GTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCG 171443 || | ||||| ||||| ||||| ||||||||||||||||||||||||||||||||| | | Sbjct 78168 GTCGTTTAATTTTCCAATATGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAG 78109 Query 171444 CTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCA 171503 ||| | || || || || | ||||| || || | ||||| | || |||||||||| Sbjct 78108 CTGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTCA 78049 Query 171504 ACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGT-ACCA 171562 || | || || ||||||||||||||||||||||||||| || | || ||| | || Sbjct 78048 ACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGG---TCGTGTAATCA 77992 Query 171563 ACA--TGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAA 171620 ||| |||| ||| || | ||| | || ||| | || |||||||| ||||| || | | Sbjct 77991 ACACTTGGGCAGACATTATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTA 77932 Query 171621 ATGCACACAACTTCCCACTAGACCTAGC 171648 | || |||||||||||| |||| |||| Sbjct 77931 ACGCTCACAACTTCCCATTAGATTTAGC 77904 Score = 499 bits (552), Expect = 3e-136 Identities = 740/1046 (71%), Gaps = 31/1046 (3%) Strand=Plus/Plus Query 171792 TGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCT 171851 |||||||| ||| ||||||| ||| | | || |||||||| ||| | |||||||| Sbjct 31640 TGGTTTGATGTTGTTGATGACTGGCTTCGTCGTGACCGTTTCGTTTTCGTAGGATGGTCA 31699 Query 171852 GGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACT 171911 || | ||| | || ||| || ||||| ||| | || ||||||||| ||||||||| Sbjct 31700 GGGTTATTATTATTCCCTACAGCATACCTTGCACTAGGTGGTTGGTTCACAGGAACTACA 31759 Query 171912 TTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTT 171971 || || || || ||||| || |||||| | || || |||||| | || || ||||| Sbjct 31760 TTTGTAACATCTTGGTATACTCATGGTTTAGCGTCTTCATATTTAGAAGGTTGCAACTTC 31819 Query 171972 TTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGG 172031 ||||| || || |||||||| || | || ||||||||| | |||| ||||| ||| Sbjct 31820 TTAACAGCTGCTGTATCAACTCCAGCGAATAGTATGGGTCACTCTTTATTATTCCTTTGG 31879 Query 172032 GGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTT 172091 || ||||| || ||||| ||| || || |||| |||||||||||| || |||| ||| Sbjct 31880 GGTCCTGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTCTTTGGACATTT 31939 Query 172092 GTAGCATTACATGGAGTC-TTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGC 172150 || || | || || ||| ||| || || |||||||||||| | |||||||| ||||| Sbjct 31940 GTTGCCCTTCACGG-GTCTTTTTCTCTTATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 31998 Query 172151 AGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATT 172210 | | || || ||||| || ||||| | || |||||||| |||| | ||||| Sbjct 31999 ACGTTCAGTAAAAATTCGTCCATATAACGCTATTGCTTTCTCAGCTCCTATTTCTGTATT 32058 Query 172211 CACGAGCATC---TTTC-TAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTT 172266 | | || |||| |||| ||||| ||||| || | ||||||| || || ||| Sbjct 32059 C----GTTTCTGTTTTCTTAATTTATCCTTTAGGACAATCTGGTTGGTTTTTTGCTCCTA 32114 Query 172267 CATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAA 172326 || ||||| || ||||| || || | ||||||||| | || || |||||||| | Sbjct 32115 GCTTCGGTGTAGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGCTTCCACAACTGGA 32174 Query 172327 CTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTG 172386 || | || || || ||||||||||||||||| ||| ||||||||| |||||||| |||| Sbjct 32175 CTTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGTGCTGCATTACTTTGTG 32234 Query 172387 CCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAG 172446 | || || |||||||| ||| | |||||| | | |||||| || | Sbjct 32235 CGATTCACGGTGCAACTGTAGAAAACACACTATTTGAAGA---------------TG--G 32277 Query 172447 GTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATA 172506 | | | ||| | || ||| | || || | || ||||||| |||||||| ||| Sbjct 32278 TGATGGTGCAAAC----ACATTCCGTGCGTTTAACCCAACACAGGCTGAAGAAACATATT 32333 Query 172507 GTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAA 172566 ||| |||| || || | ||||||||||| || |||||| |||| |||||||||||| Sbjct 32334 CAATGGTTACGGCAAATCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAACAAAC 32393 Query 172567 GATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAG 172626 | | ||||||||| ||||||| || || || || | ||| | |||| |||| | Sbjct 32394 GTTGGTTACACTTCTTTATGTTATTTGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTG 32453 Query 172627 GTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAG 172686 | | |||||| | || | || | | ||||| || || || || ||||| || | | Sbjct 32454 GCGTTGTAGGTTTAGCTTTAAATTTACGTGCATATGATTTCGTTTCACAAGAAATTCGCG 32513 Query 172687 CAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTA 172746 | || ||||| || || |||||||| ||||| || || || |||||| | || ||||||| Sbjct 32514 CTGCGGAAGATCCTGAATTTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTA 32573 Query 172747 TGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAG 172806 | | || |||||| | || ||||| || ||||| || |||| ||||| || || | Sbjct 32574 TTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGG 32633 Query 172807 TCTTGCCACGAGGCAACGCACTATAA 172832 | || ||||| || ||||| || ||| Sbjct 32634 TTTTACCACGTGGAAACGCTCTTTAA 32659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570267659462400