Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq148 753 0.0 >seq148 Length=122497 Score = 753 bits (834), Expect = 0.0 Identities = 748/966 (77%), Gaps = 2/966 (0%) Strand=Plus/Minus Query 166081 AACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACC 166140 |||||| | || | ||||||||||| | | ||||| || ||||| || | ||||| Sbjct 78859 AACCGTTTATACATCGGTTGGTTTGGTGTATTAATGATCCCTACTCTTTTAACTGCAACT 78800 Query 166141 ATCTGTTT-CATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGA 166199 ||||||| ||| |||| || | ||||| |||||||| ||||||||||| |||||||| Sbjct 78799 -TCTGTTTTCATTATCGCGTTTATCGCGGCTCCTCCTGTTGATATCGATGGTATCCGTGA 78741 Query 166200 GCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCCTC 166259 ||| ||| | || || || | || || |||||||||||| ||||||| || | || | Sbjct 78740 GCCTGTATCTGGTTCATTATTATACGGAAACAACATCATCACTGGTGCAATTATTCCTAC 78681 Query 166260 CTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAATG 166319 || ||||| || ||| | |||||||| || || |||||||| ||||| | ||||| || Sbjct 78680 ATCTAACGCTATCGGTTTACACTTCTACCCAATTTGGGAAGCTGCATCTTTAGATGAGTG 78621 Query 166320 GCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGC 166379 | | || ||||||||||||| ||| || | || | |||||| || | || | | | | Sbjct 78620 GTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCTTCTTAGGTGTATGTTC 78561 Query 166380 CTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGT 166439 ||||||||||||||||||||||| |||| ||| | ||||||||||| ||||| || Sbjct 78560 TTACATGGGTCGTGAATGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCAGT 78501 Query 166440 AGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCA 166499 || ||||| ||||| ||||| ||||| | || || ||| | |||| || ||||||| Sbjct 78500 TGCTTACTCAGCACCAGTTGCTGCAGCTACAGCTGTATTCATTATCTACCCACTCGGTCA 78441 Query 166500 AGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGT 166559 ||||||||||||||||| ||||| | |||||| || || ||||||| |||| | || Sbjct 78440 AGGTTCTTTCTCTGACGGTATGCCTTTAGGTATCTCAGGTACTTTCAACTTCATGATCGT 78381 Query 166560 CTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGT 166619 |||||||| ||||||||||| || |||||||| ||||| ||||| |||||||| ||||| Sbjct 78380 ATTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGCTTGGTGTAGCTGGTGT 78321 Query 166620 ATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCGTCCG 166679 ||| ||||| ||| | ||||| ||||||||||| || || ||||| || | | || Sbjct 78320 ATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCACTTGTAACTTCTTCTTTAATTCG 78261 Query 166680 TGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGAC 166739 ||| || ||||||| || || ||| | |||||||| || |||||||||||||| || Sbjct 78260 TGAAACTACTGAAAACGAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAAC 78201 Query 166740 CTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTT 166799 ||||||||||| || |||||||| ||||||||||| | || |||||||| ||||| || Sbjct 78200 TTACAACATCGTTGCAGCTCATGGCTACTTCGGTCGTTTAATTTTCCAATATGCTTCATT 78141 Query 166800 CAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTT 166859 |||||||||||| || | ||||||||| | || || ||||| ||||| ||||| ||||| Sbjct 78140 CAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTT 78081 Query 166860 TACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTC 166919 |||||| | ||| || || |||||||||||| | || ||||||||||||||||| || Sbjct 78080 CACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATC 78021 Query 166920 CATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGG 166979 | | ||| || |||||||| |||||||||||||||| | ||||||||||| Sbjct 78020 AGTTGTAGATTCACAAGGTCGTGTAATCAACACTTGGGCAGACATTATCAACCGTGCTAA 77961 Query 166980 TCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGCTGC 167039 | |||||||||||||||||||||||||| |||||||||||||| | ||| | |||| Sbjct 77960 CTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGATTTAGCTGT 77901 Query 167040 TGCTGA 167045 || ||| Sbjct 77900 TGTTGA 77895 Score = 562 bits (622), Expect = 3e-155 Identities = 738/1020 (72%), Gaps = 2/1020 (0%) Strand=Plus/Plus Query 167294 GGGTGGTTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGG 167353 || ||||||||||| | |||||||||||| || ||||| || || || || || ||| Sbjct 31637 GGTTGGTTTGATGTTGTTGATGACTGGCTTCGTCGTGACCGTTTCGTTTTCGTAGGATGG 31696 Query 167354 TCTGGATTACTTCTTTTTCCC-ACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCAC 167412 || || ||| || || ||||| || || || || ||| | ||||| ||| | || || || Sbjct 31697 TCAGGGTTA-TTATTATTCCCTACAGCATACCTTGCACTAGGTGGTTGGTTCACAGGAAC 31755 Query 167413 GACGTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACCTTGAGGGTGCTAA 167472 || ||||| || |||||||| || || || |||||| || | || ||| || Sbjct 31756 TACATTTGTAACATCTTGGTATACTCATGGTTTAGCGTCTTCATATTTAGAAGGTTGCAA 31815 Query 167473 TTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACT 167532 || | || || || || |||||||| || | ||||||||| ||| | | | || Sbjct 31816 CTTCTTAACAGCTGCTGTATCAACTCCAGCGAATAGTATGGGTCACTCTTTATTATTCCT 31875 Query 167533 TTGGGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGC 167592 |||||||||||| |||| || ||||| | | ||||| || | || || || ||| | Sbjct 31876 TTGGGGTCCTGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTCTTTGGAC 31935 Query 167593 TTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGAT 167652 ||||| || || ||||| | ||| |||| || || || |||||||| || ||||| || Sbjct 31936 ATTTGTTGCCCTTCACGGGTCTTTTTCTCTTATTGGTTTCATGCTTCGTCAGTTTGAAAT 31995 Query 167653 AAGTAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGT 167712 | |||| || ||||| || || || |||||||| || | ||| ||| |||| Sbjct 31996 TGCACGTTCAGTAAAAATTCGTCCATATAACGCTATTGCTTTCTCAGCTCCTATTTCTGT 32055 Query 167713 CTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTC 167772 || || |||||||| | || |||||| | ||||| || ||||||| ||||| || Sbjct 32056 ATTCGTTTCTGTTTTCTTAATTTATCCTTTAGGACAATCTGGTTGGTTTTTTGCTCCTAG 32115 Query 167773 GTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGAC 167832 || ||||| || || || || ||||| | ||||| | || || ||||| |||||||| Sbjct 32116 CTTCGGTGTAGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGCTTCCACAACTGGAC 32175 Query 167833 GCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGC 167892 | |||||||||||||||||||| || || ||| | || || | |||||| |||| ||| Sbjct 32176 TTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGTGCTGCATTACTTTGTGC 32235 Query 167893 AATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTT 167952 || || |||| || ||||| || || || | |||||||||||| |||||||| || Sbjct 32236 GATTCACGGTGCAACTGTAGAAAACACACTATTTGAAGATGGTGATGGTGCAAACACATT 32295 Query 167953 CAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATT 168012 | || ||| | | || |||| || ||||| ||||| ||||| || || || || || Sbjct 32296 CCGTGCGTTTAACCCAACACAGGCTGAAGAAACATATTCAATGGTTACGGCAAATCGTTT 32355 Query 168013 CTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCT 168072 |||||| |||||||||||| | ||||| || || |||||||| |||||||||||| | Sbjct 32356 CTGGTCACAAATTTTTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGTT 32415 Query 168073 TTTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAA 168132 || ||||| || | || ||||||| ||| ||||||| | | ||| | || | || Sbjct 32416 ATTTGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGCGTTGTAGGTTTAGCTTTAAA 32475 Query 168133 TCTTCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGA 168192 | | ||||| ||||| || || || || ||| || | || || || ||||| || ||||| Sbjct 32476 TTTACGTGCATATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAAGATCCTGAATTTGA 32535 Query 168193 AACTTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGT 168252 |||||||||||| ||||| || || | || ||||| | ||||| ||||||||| | Sbjct 32536 AACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCA 32595 Query 168253 AGACCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 ||| || || |||||||| |||||||||| || || || || ||| | || |||||||| Sbjct 32596 AGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCT 32655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567230865536000